General information for g7795.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Polypeptide N-acetylgalactosaminyltransferase 10.
Parent gene
- The parent gene g7795 is located on chr_2: 26145119..26146072 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7795 | g7795.t1 | isoform | g7795.t1 | 26143216 | 26145119 |
| chr_2 | g7795 | g7795.t1 | exon | g7795.t1.exon1 | 26143216 | 26143405 |
| chr_2 | g7795 | g7795.t1 | cds | g7795.t1.CDS1 | 26143216 | 26143405 |
| chr_2 | g7795 | g7795.t1 | exon | g7795.t1.exon2 | 26143471 | 26143612 |
| chr_2 | g7795 | g7795.t1 | cds | g7795.t1.CDS2 | 26143471 | 26143612 |
| chr_2 | g7795 | g7795.t1 | exon | g7795.t1.exon3 | 26143669 | 26144222 |
| chr_2 | g7795 | g7795.t1 | cds | g7795.t1.CDS3 | 26143669 | 26144222 |
| chr_2 | g7795 | g7795.t1 | exon | g7795.t1.exon4 | 26144278 | 26145119 |
| chr_2 | g7795 | g7795.t1 | cds | g7795.t1.CDS4 | 26144278 | 26145119 |
| chr_2 | g7795 | g7795.t1 | TSS | g7795.t1 | NA | NA |
| chr_2 | g7795 | g7795.t1 | TTS | g7795.t1 | NA | NA |
Sequences
>g7795.t1 Gene=g7795 Length=1728
ATGAAGTCTTCAAAGCGACAAACTAGACAATTTGTATCATTAATCATTTCAATAATTCTT
CTCTTTTTTATAACACAAGTTTCATTAAAACTTGTTTCAAACTTTAATAAAATTGAAGAT
GATGAAAATAATATTAGTTATGAACCTGATATTAGTTTATTAATTTATGAAATTAACAGA
AAAGGTCCAGGTGAATATGGACAACCATTTTATCTCACAGATCCAACAGAAATAGCTAAA
AGTGAAATTTTTTTAACAAAAGAAGGTTTCAATGTTGTAGTAAGTGATAAAATTTCTTTA
ACAAGGTCACTTCCTGATTATCGACCTAAATTATGCAAATATAAAACTTATTTAAAAACA
TTACCGAAAGTGTCTGTGATCATAACATTTCACAATGAAATATGGACTGTTTTGTTGCGT
TGTATTCATTCAATTTATCATCGTTCTCCAAGTAATTTGCTGCATGAAATTATTCTTATC
AATGATGGTAGCACATTTAATGAACTTTATGAACCATTGCAAAAATATTTCAATGGAACT
TTCGAATCAAAAGTCAAAATTCATCAAAATTTACAACGAGAAGGATTAATTAAATCAAGA
ATGATTGGAGCGAGACTTGCAGAAGCAGAAGTAATAATTTTTCTTGATTCACATATGGAA
GTCACAAATTCATGGCTTCCTCCACTTCTTGAACCACTTGTTTATTATCCCGCATATGCG
ACTGTTCCGATTGTCGAAAGCTTAAATCATAACACATTTGCATATGAATACATTGGCAAT
GGCTATCGTGGCACATTCGATTGGAATTTGAGATATCAATGGTTACCTCGACCGCAAAAA
GATCCAAAGCATATATCAGATAATTATGAACTATCTAGTATGACAGGTGGTGCATATGCA
ATAAAAAGGGAGCATTTCTTTCATCTTGGTGGATATGATGAAGAGTTGAAAATATGGAAT
GGGGAAAATTATGAACTTTCATTAAAACTATGGTTGTGTTCCGGAGGAGGAATTTTTACT
GTCCCATGCTCACGAGTGGCTCATCTTTCAAAAATGTCCACTGCATATCAGGTTGAAGAT
GAAAAAATCATTGCGAGAAATTTAAAGCGAGTTGTAGAAGTTTGGTTTGATGATTATAAA
AAATATTTTTATCGAAATGATCCACAAAGGTATGCAAAAATAGATGCAGGTGATTTATCT
AAACAGTTTGAATTGAAAAAGAAATTAAAATGCAAACCATTTAAATATTTTCTTGATGTT
GTCGCTCCTGAAATGCTTGAAAGATATCCATTACAACCAAAATATTTTGCTAGAGGTTTA
ATTCAAAATCAAAAACTTAAACTATGTGTAGGAATAACTAATTCAACATATGAATTGCCA
GTACGTCTTGTAAGTTGTAACCTTTTATCGAAAGTTCAATCATTTGGATCTGATTTTACA
CTTACAATGGAAAAAAGTATTAGATTTAACGATATAAATGATCAGTGTCTCATTGGTGAT
GATTTATCTTTAGACAATTGTCATCATCAAGGAAGAAATCAACTTTTTGTTTTTAACATT
ACAACAAGACAAATTTTTTATCCATTAGAAAATAAATGTTTGAGTAGTATGAGAAGCAGA
AAAATAATTTTAACTAGCTGTAATACTAATTCAAAATTACAAAAATGGATTTGGAGTTAT
GAAAATATAACAGCATTAAATAATTGGGAAAATACTGGATTTAATTAA
>g7795.t1 Gene=g7795 Length=575
MKSSKRQTRQFVSLIISIILLFFITQVSLKLVSNFNKIEDDENNISYEPDISLLIYEINR
KGPGEYGQPFYLTDPTEIAKSEIFLTKEGFNVVVSDKISLTRSLPDYRPKLCKYKTYLKT
LPKVSVIITFHNEIWTVLLRCIHSIYHRSPSNLLHEIILINDGSTFNELYEPLQKYFNGT
FESKVKIHQNLQREGLIKSRMIGARLAEAEVIIFLDSHMEVTNSWLPPLLEPLVYYPAYA
TVPIVESLNHNTFAYEYIGNGYRGTFDWNLRYQWLPRPQKDPKHISDNYELSSMTGGAYA
IKREHFFHLGGYDEELKIWNGENYELSLKLWLCSGGGIFTVPCSRVAHLSKMSTAYQVED
EKIIARNLKRVVEVWFDDYKKYFYRNDPQRYAKIDAGDLSKQFELKKKLKCKPFKYFLDV
VAPEMLERYPLQPKYFARGLIQNQKLKLCVGITNSTYELPVRLVSCNLLSKVQSFGSDFT
LTMEKSIRFNDINDQCLIGDDLSLDNCHHQGRNQLFVFNITTRQIFYPLENKCLSSMRSR
KIILTSCNTNSKLQKWIWSYENITALNNWENTGFN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 11 | g7795.t1 | CDD | cd00161 | RICIN | 487 | 560 | 9.49241E-6 |
| 7 | g7795.t1 | Gene3D | G3DSA:3.90.550.10 | Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 46 | 432 | 2.3E-140 |
| 6 | g7795.t1 | Gene3D | G3DSA:2.80.10.50 | - | 433 | 572 | 1.2E-16 |
| 3 | g7795.t1 | PANTHER | PTHR11675 | N-ACETYLGALACTOSAMINYLTRANSFERASE | 62 | 561 | 3.0E-129 |
| 2 | g7795.t1 | Pfam | PF00535 | Glycosyl transferase family 2 | 125 | 306 | 2.9E-24 |
| 1 | g7795.t1 | Pfam | PF00652 | Ricin-type beta-trefoil lectin domain | 439 | 556 | 3.7E-12 |
| 8 | g7795.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 11 | - |
| 10 | g7795.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 12 | 29 | - |
| 9 | g7795.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 30 | 575 | - |
| 13 | g7795.t1 | ProSiteProfiles | PS50231 | Lectin domain of ricin B chain profile. | 448 | 559 | 12.457 |
| 5 | g7795.t1 | SUPERFAMILY | SSF53448 | Nucleotide-diphospho-sugar transferases | 102 | 424 | 1.5E-51 |
| 4 | g7795.t1 | SUPERFAMILY | SSF50370 | Ricin B-like lectins | 431 | 558 | 4.59E-15 |
| 12 | g7795.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 12 | 29 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed