General information for g7853.t12
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Zinc finger FYVE domain-containing protein 1.
Parent gene
- The parent gene g7853 is located on chr_2: 26420665..26421463 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7853 | g7853.t12 | isoform | g7853.t12 | 26420665 | 26421463 |
| chr_2 | g7853 | g7853.t12 | exon | g7853.t12.exon1 | 26420665 | 26421236 |
| chr_2 | g7853 | g7853.t12 | cds | g7853.t12.CDS1 | 26420667 | 26421236 |
| chr_2 | g7853 | g7853.t12 | exon | g7853.t12.exon2 | 26421461 | 26421463 |
| chr_2 | g7853 | g7853.t12 | cds | g7853.t12.CDS2 | 26421461 | 26421463 |
| chr_2 | g7853 | g7853.t12 | TSS | g7853.t12 | 26421541 | 26421541 |
| chr_2 | g7853 | g7853.t12 | TTS | g7853.t12 | NA | NA |
Sequences
>g7853.t12 Gene=g7853 Length=575
ATGGACACAATTTCATCGCCTATCTATGTGTCGCGCGCGGAATCGAAGCCAGATTTGTTG
AATGTCAGCAAGGAAATCGAGGATGCCCTGCACAGTATAAATCTCAATAGTCAAACATAT
GACACCAATGATCCGCACAGTAAATCCTTTGCCATTATAGACTCAAATGAAAATTTTCAA
GTTAGCAGTTTGGAAAATTTTACAAAAAAACTTGGCATAGGCGATTGTGAAAAGAAGGTG
AAGGTTGTGTCAATTTTTGGGAACTCAGGTGATGGAAAATCGCACACACTCAATAATGTG
TTCTTTGATGGCTATGAAATATTCAAAATGAGTTCCGAGCAAAAGTCATGCACATTAGGT
GTATGGCTTGCGTATCAAGGATATTTTTATAACAGTCCAATTCTATGTGTCGATACAGAA
GGACTTCAGGGAGTAGCACAAAATGAAAATCAACAGCATCGAATGCTTATGAAGGTACTT
GCCGTATCTGATATTATTATTTATCGAACACGAGCAGAACGACTAAACTCAGATATGTAC
AAATTTCTTGGAACAGCATCGAAAATATATCAACG
>g7853.t12 Gene=g7853 Length=191
MDTISSPIYVSRAESKPDLLNVSKEIEDALHSINLNSQTYDTNDPHSKSFAIIDSNENFQ
VSSLENFTKKLGIGDCEKKVKVVSIFGNSGDGKSHTLNNVFFDGYEIFKMSSEQKSCTLG
VWLAYQGYFYNSPILCVDTEGLQGVAQNENQQHRMLMKVLAVSDIIIYRTRAERLNSDMY
KFLGTASKIYQ
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g7853.t12 | Gene3D | G3DSA:3.40.50.300 | - | 45 | 191 | 0.0e+00 |
| 2 | g7853.t12 | PANTHER | PTHR23164 | EARLY ENDOSOME ANTIGEN 1 | 34 | 190 | 0.0e+00 |
| 3 | g7853.t12 | PANTHER | PTHR23164:SF19 | ZINC FINGER FYVE-TYPE CONTAINING 1 | 34 | 190 | 0.0e+00 |
| 1 | g7853.t12 | Pfam | PF02263 | Guanylate-binding protein, N-terminal domain | 75 | 170 | 1.9e-05 |
| 4 | g7853.t12 | SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 50 | 188 | 0.0e+00 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005525 | GTP binding | MF |
| GO:0003924 | GTPase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
