Chromosome | Gene | Transcript | Category | ID | Start | End |
---|---|---|---|---|---|---|
chr_2 | g7854 | g7854.t6 | TTS | g7854.t6 | 26421757 | 26421757 |
chr_2 | g7854 | g7854.t6 | isoform | g7854.t6 | 26422338 | 26422901 |
chr_2 | g7854 | g7854.t6 | exon | g7854.t6.exon1 | 26422338 | 26422566 |
chr_2 | g7854 | g7854.t6 | cds | g7854.t6.CDS1 | 26422340 | 26422566 |
chr_2 | g7854 | g7854.t6 | exon | g7854.t6.exon2 | 26422631 | 26422716 |
chr_2 | g7854 | g7854.t6 | cds | g7854.t6.CDS2 | 26422631 | 26422716 |
chr_2 | g7854 | g7854.t6 | exon | g7854.t6.exon3 | 26422779 | 26422901 |
chr_2 | g7854 | g7854.t6 | cds | g7854.t6.CDS3 | 26422779 | 26422861 |
chr_2 | g7854 | g7854.t6 | TSS | g7854.t6 | 26423454 | 26423454 |
>g7854.t6 Gene=g7854 Length=438
GGGTCATCAAAGCAGTTTGTCATGTACAGTTCTGTTTTTAATGATGTATTTCTGTCTAAT
GGCTTCCTTCACTTGGTGGGTGTTTTTCGCATTATCTTGGCTACTTGCGTCAGGCTTTAA
ATGGGGTCATGAAGCAATTGAATCGAGAGCACATCTTTTTCATCTTTGTGGATGGGCTTT
ACCTGGAATTCAAACAATTTTTGTGCTTGCATTAGGGAAAGTAGAAGGTGACATTTTGTC
AGGTGTTTGCTTCGTTGGAATGTTATCACGTCATTCAATTGCCATATTTTTGCTGATTCC
ATTGACAATCTATCTAGTGATTGGAACACTCTTTTTCTCCGTTGGCTTCGTTGCACTTCT
CAAAATCCGAACCATGATGAGAAATAAAAATGATGGAACAAGGACTGATAAATTAGAAAA
ATTGATGTATCGGATTGT
>g7854.t6 Gene=g7854 Length=132
MMYFCLMASFTWWVFFALSWLLASGFKWGHEAIESRAHLFHLCGWALPGIQTIFVLALGK
VEGDILSGVCFVGMLSRHSIAIFLLIPLTIYLVIGTLFFSVGFVALLKIRTMMRNKNDGT
RTDKLEKLMYRI
Transcript | Database | ID | Name | Start | End | E.value | |
---|---|---|---|---|---|---|---|
8 | g7854.t6 | Gene3D | G3DSA:1.20.1070.10 | - | 1 | 132 | 3.8E-48 |
2 | g7854.t6 | PANTHER | PTHR11309 | FRIZZLED | 2 | 132 | 3.2E-45 |
3 | g7854.t6 | PANTHER | PTHR11309:SF31 | FRIZZLED-7 | 2 | 132 | 3.2E-45 |
6 | g7854.t6 | PRINTS | PR00489 | Frizzled protein signature | 40 | 63 | 1.7E-18 |
4 | g7854.t6 | PRINTS | PR00489 | Frizzled protein signature | 85 | 107 | 1.7E-18 |
5 | g7854.t6 | PRINTS | PR00489 | Frizzled protein signature | 128 | 132 | 1.7E-18 |
1 | g7854.t6 | Pfam | PF01534 | Frizzled/Smoothened family membrane region | 1 | 132 | 4.8E-49 |
13 | g7854.t6 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 23 | - |
14 | g7854.t6 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 3 | - |
15 | g7854.t6 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 4 | 18 | - |
19 | g7854.t6 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 19 | 23 | - |
11 | g7854.t6 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 24 | 38 | - |
18 | g7854.t6 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 39 | 58 | - |
10 | g7854.t6 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 59 | 64 | - |
17 | g7854.t6 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 65 | 84 | - |
12 | g7854.t6 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 85 | 89 | - |
16 | g7854.t6 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 90 | 107 | - |
9 | g7854.t6 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 108 | 132 | - |
24 | g7854.t6 | ProSiteProfiles | PS50261 | G-protein coupled receptors family 2 profile 2. | 1 | 132 | 23.669 |
23 | g7854.t6 | SMART | SM01330 | Frizzled_2 | 1 | 131 | 1.5E-11 |
7 | g7854.t6 | SignalP_EUK | SignalP-TM | SignalP-TM | 1 | 25 | - |
21 | g7854.t6 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 4 | 26 | - |
22 | g7854.t6 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 39 | 58 | - |
20 | g7854.t6 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 85 | 107 | - |
IUPRED3 score over 0.5 is predictive of a disordered region.
GOID | TERM | ONTOLOGY |
---|---|---|
GO:0016020 | membrane | CC |
GO:0042813 | Wnt-activated receptor activity | MF |
GO:0016055 | Wnt signaling pathway | BP |
GO:0016021 | integral component of membrane | CC |
GO:0004888 | transmembrane signaling receptor activity | MF |
GO:0007166 | cell surface receptor signaling pathway | BP |
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
TPM values are indicated as average +/- STDEV.
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.