Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Frizzled.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g7854 g7854.t9 TTS g7854.t9 26423042 26423042
chr_2 g7854 g7854.t9 isoform g7854.t9 26423754 26424291
chr_2 g7854 g7854.t9 exon g7854.t9.exon1 26423754 26423935
chr_2 g7854 g7854.t9 cds g7854.t9.CDS1 26423756 26423935
chr_2 g7854 g7854.t9 exon g7854.t9.exon2 26424061 26424291
chr_2 g7854 g7854.t9 cds g7854.t9.CDS2 26424061 26424291
chr_2 g7854 g7854.t9 TSS g7854.t9 26424417 26424417

Sequences

>g7854.t9 Gene=g7854 Length=413
ATGTCGAATAATGTAAAGTTTAGTTTGTTAGTTTTATTTCTTAAAGTATTTTTTGTAATA
TCTCAACAATCGAGCGTAGTAATATCAACAGAGTCAAAAACTCGACAGAAGGATTACGAT
CGAATATCAAGTTATAATCAAAAATGCGAGCCAATACAAATTCCGCTTTGCCAAGATATA
CAATTTTATAATCAAACAATTTTTCCAAATCTCCTGAATCATGCACGACAGGACGAAGCA
GCGCTTGAAGTTCATCAATTTATTCCACTTATTAAAATAAATTGTTCTCCCGACCTGAAA
TTATTTTTATGCTCACTTTATGCTCCGATATGTACAATCTTGGATTATCCTATTCCGCCA
TGCAGAAAGTTATGTGAAAGTGCCAGAAATTGTGAAAAAATTATGAGAACATT

>g7854.t9 Gene=g7854 Length=137
MSNNVKFSLLVLFLKVFFVISQQSSVVISTESKTRQKDYDRISSYNQKCEPIQIPLCQDI
QFYNQTIFPNLLNHARQDEAALEVHQFIPLIKINCSPDLKLFLCSLYAPICTILDYPIPP
CRKLCESARNCEKIMRT

Protein features from InterProScan

Transcript Database ID Name Start End E.value
7 g7854.t9 Gene3D G3DSA:1.10.2000.10 - 41 137 4.0E-31
2 g7854.t9 PANTHER PTHR11309 FRIZZLED 7 136 5.3E-42
3 g7854.t9 PANTHER PTHR11309:SF47 FRIZZLED 7 136 5.3E-42
1 g7854.t9 Pfam PF01392 Fz domain 49 135 1.2E-23
9 g7854.t9 Phobius SIGNAL_PEPTIDE Signal peptide region 1 29 -
10 g7854.t9 Phobius SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide. 1 8 -
11 g7854.t9 Phobius SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide. 9 20 -
12 g7854.t9 Phobius SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide. 21 29 -
8 g7854.t9 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 30 137 -
14 g7854.t9 ProSiteProfiles PS50038 Frizzled (fz) domain profile. 44 137 21.836
13 g7854.t9 SMART SM00063 FRI_4 48 136 7.3E-33
4 g7854.t9 SUPERFAMILY SSF63501 Frizzled cysteine-rich domain 48 136 4.45E-30
6 g7854.t9 SignalP_EUK SignalP-noTM SignalP-noTM 1 21 -
5 g7854.t9 SignalP_GRAM_POSITIVE SignalP-TM SignalP-TM 1 29 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005515 protein binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed