General information for g7901.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Folate transporter 1.
Parent gene
- The parent gene g7901 is located on chr_2: 26930820..26932248 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7901 | g7901.t1 | isoform | g7901.t1 | 26930820 | 26932248 |
| chr_2 | g7901 | g7901.t1 | exon | g7901.t1.exon1 | 26930820 | 26931314 |
| chr_2 | g7901 | g7901.t1 | cds | g7901.t1.CDS1 | 26930820 | 26931314 |
| chr_2 | g7901 | g7901.t1 | exon | g7901.t1.exon2 | 26931377 | 26931612 |
| chr_2 | g7901 | g7901.t1 | cds | g7901.t1.CDS2 | 26931377 | 26931612 |
| chr_2 | g7901 | g7901.t1 | exon | g7901.t1.exon3 | 26931729 | 26932248 |
| chr_2 | g7901 | g7901.t1 | cds | g7901.t1.CDS3 | 26931729 | 26932248 |
| chr_2 | g7901 | g7901.t1 | TSS | g7901.t1 | 26932297 | 26932297 |
| chr_2 | g7901 | g7901.t1 | TTS | g7901.t1 | NA | NA |
Sequences
>g7901.t1 Gene=g7901 Length=1251
ATGCAAAATTATCTCAAAATATCATTTGCATTGAGTGCATTTGGATTTTTAAAAGAAACT
CGACTAATTGAACCATTTTTAACTGATTATTACACATCATATGATGGCGTCACAGAGGAA
GTAATAAACAGAGAAATCTTCCCAGTTGGAACTTATTCGCATATGATTCAACTTCTGATA
ATTTTCTTAATCACCGATTATCTAAGATACAAGCCACTTATTATTGTTCTTGGATTATCT
AGTGTCTCAATATGGGGGATCATGCTGCTAGTTAAAGCAAAACTTGGATTGCAAATAATT
GAAGTAATTTATGGAACATTTTGTGCTTGTGAAGTTGCTTATTATAGTTATATTTATGCA
AAAACTGATAAACAACATTATCAAATTGTAACATCACATACAAGAGCTGCAGTTTTATTA
GGAAAATTCTTTTCAGCTACACTTTCGCAACTCATCGTTTATTTCTTTCATGACGCTGAT
AACATTAATTATCGACAGCTTAACTTCATCACATTTATCTTTCAAGTAGTAACAGCAATT
TGGAGCATTTTCTTTATACCATCTGTTAATAGAAGCATTTATTTTCATTGTAAAGAGATT
GAAAATGTTGAGTCCACAAAGCAATCATTTTCAAGTGCATTTATGCTAATTTGGGAACAT
TTCAAGACTTCTTATAGAAATGAGACTGTGCTTTTATGGTGCATTTTTTATGCATTTTCT
TTCTGTCTCTACTTTCAAATTACCGCATACATTCAGATTTTATGGCTAGCCATTGATGAG
TATGTGTTCTGGAATGCAACCGTTGATGGTTGTCTAACTTTACTTAGTGCCATTGCAATG
TTAATTGCTGGAAAAATTCAAATTTCTTTCTTGAAAAAGCAAAGTACCACAATGATAGTT
TTAATTTTAATGTCATTGCTTCAAGGAGTTTTCATGTTTTTTGCGGCAACAGCTCTGACA
CTTTTAACTTGTTACATTTTCTACATTCTCAATGGTATTGCATATGGTTTCAGCATCACA
ATTTGTGCAACGAAAATTGCCGAAAATATTGCTGAAGATTCGCATGGATTAGTTTTTGGA
TTTAATACTTTTATTGCACTTTGTATTCAAACATGCCTCACTTTAGCCATTGTATCGAGT
GGATTTAAATTGCCTGCAGTCGGTCAATTTATTGTGTACAGTGTAATGTATTTTATCTTG
GGATTTTTTTTTCTTGTTAAATTTCTAATTGATTGGTGCAGATCAAGATAA
>g7901.t1 Gene=g7901 Length=416
MQNYLKISFALSAFGFLKETRLIEPFLTDYYTSYDGVTEEVINREIFPVGTYSHMIQLLI
IFLITDYLRYKPLIIVLGLSSVSIWGIMLLVKAKLGLQIIEVIYGTFCACEVAYYSYIYA
KTDKQHYQIVTSHTRAAVLLGKFFSATLSQLIVYFFHDADNINYRQLNFITFIFQVVTAI
WSIFFIPSVNRSIYFHCKEIENVESTKQSFSSAFMLIWEHFKTSYRNETVLLWCIFYAFS
FCLYFQITAYIQILWLAIDEYVFWNATVDGCLTLLSAIAMLIAGKIQISFLKKQSTTMIV
LILMSLLQGVFMFFAATALTLLTCYIFYILNGIAYGFSITICATKIAENIAEDSHGLVFG
FNTFIALCIQTCLTLAIVSSGFKLPAVGQFIVYSVMYFILGFFFLVKFLIDWCRSR
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 14 | g7901.t1 | Gene3D | G3DSA:1.20.1250.20 | MFS general substrate transporter like domains | 5 | 410 | 1.3E-15 |
| 2 | g7901.t1 | PANTHER | PTHR10686 | FOLATE TRANSPORTER | 3 | 415 | 1.8E-106 |
| 1 | g7901.t1 | Pfam | PF01770 | Reduced folate carrier | 3 | 392 | 1.2E-106 |
| 28 | g7901.t1 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 22 | - |
| 29 | g7901.t1 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 6 | - |
| 30 | g7901.t1 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 7 | 17 | - |
| 42 | g7901.t1 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 18 | 22 | - |
| 23 | g7901.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 23 | 45 | - |
| 32 | g7901.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 46 | 65 | - |
| 17 | g7901.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 66 | 71 | - |
| 40 | g7901.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 72 | 91 | - |
| 27 | g7901.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 92 | 96 | - |
| 35 | g7901.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 97 | 117 | - |
| 21 | g7901.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 118 | 136 | - |
| 34 | g7901.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 137 | 157 | - |
| 25 | g7901.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 158 | 168 | - |
| 41 | g7901.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 169 | 189 | - |
| 16 | g7901.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 190 | 229 | - |
| 33 | g7901.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 230 | 255 | - |
| 22 | g7901.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 256 | 260 | - |
| 31 | g7901.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 261 | 284 | - |
| 20 | g7901.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 285 | 295 | - |
| 38 | g7901.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 296 | 319 | - |
| 24 | g7901.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 320 | 324 | - |
| 37 | g7901.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 325 | 344 | - |
| 18 | g7901.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 345 | 355 | - |
| 36 | g7901.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 356 | 378 | - |
| 26 | g7901.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 379 | 389 | - |
| 39 | g7901.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 390 | 410 | - |
| 19 | g7901.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 411 | 416 | - |
| 13 | g7901.t1 | SUPERFAMILY | SSF103473 | MFS general substrate transporter | 20 | 406 | 2.75E-19 |
| 15 | g7901.t1 | TIGRFAM | TIGR00806 | rfc: reduced folate carrier | 7 | 410 | 2.1E-77 |
| 11 | g7901.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 72 | 91 | - |
| 6 | g7901.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 96 | 118 | - |
| 4 | g7901.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 138 | 157 | - |
| 3 | g7901.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 167 | 189 | - |
| 12 | g7901.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 230 | 252 | - |
| 5 | g7901.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 262 | 284 | - |
| 10 | g7901.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 297 | 319 | - |
| 7 | g7901.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 324 | 343 | - |
| 9 | g7901.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 356 | 378 | - |
| 8 | g7901.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 388 | 410 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0090482 | vitamin transmembrane transporter activity | MF |
| GO:0051180 | vitamin transport | BP |
| GO:0016021 | integral component of membrane | CC |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed