General information for g7973.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as G2/mitotic-specific cyclin-B3.
Parent gene
- The parent gene g7973 is located on chr_2: 27430219..27431646 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7973 | g7973.t1 | TTS | g7973.t1 | 27428309 | 27428309 |
| chr_2 | g7973 | g7973.t1 | isoform | g7973.t1 | 27429000 | 27430865 |
| chr_2 | g7973 | g7973.t1 | exon | g7973.t1.exon1 | 27429000 | 27429343 |
| chr_2 | g7973 | g7973.t1 | cds | g7973.t1.CDS1 | 27429000 | 27429343 |
| chr_2 | g7973 | g7973.t1 | exon | g7973.t1.exon2 | 27429399 | 27429573 |
| chr_2 | g7973 | g7973.t1 | cds | g7973.t1.CDS2 | 27429399 | 27429573 |
| chr_2 | g7973 | g7973.t1 | exon | g7973.t1.exon3 | 27429635 | 27429790 |
| chr_2 | g7973 | g7973.t1 | cds | g7973.t1.CDS3 | 27429635 | 27429790 |
| chr_2 | g7973 | g7973.t1 | exon | g7973.t1.exon4 | 27429860 | 27430745 |
| chr_2 | g7973 | g7973.t1 | cds | g7973.t1.CDS4 | 27429860 | 27430745 |
| chr_2 | g7973 | g7973.t1 | exon | g7973.t1.exon5 | 27430807 | 27430865 |
| chr_2 | g7973 | g7973.t1 | cds | g7973.t1.CDS5 | 27430807 | 27430865 |
| chr_2 | g7973 | g7973.t1 | TSS | g7973.t1 | 27431655 | 27431655 |
Sequences
>g7973.t1 Gene=g7973 Length=1620
ATGGCAACAACCAGAGCATCGATGAACATTGCAGCAAATTCAAAGAAAGCAATCACAGGA
AAACGCAAGGCTGAGGCGAGTCCCTTGAAAAATGATCGAGTAAAGAGATGTGCATTAACA
AACCTGACAAATAATTTGAAAAATGAAACAGAAGACATTTCAAAGAAAGCTGTGCTGAAA
GACATACAGCCAGTGAGCTATAGAACAAGAGCTGCGGCAGCTGCCGCTACAACTACAAAT
CCAATCGAATTAGTTGCTCCTATTAAACCAATAGCTAAACCTCAAAAGAAGCAGCCAAAG
ACAATTAATGAAAACTTAGATAAAAATTTGAAGAACAAGGCAATTGCAACCACTGTAGTG
AAATCAAAGTCAACCGGCGAAATAACAGGAAAGCAATCAATATCAACACGTCGTATTTCC
AATGAATTTGAAAGAACCGAGGATAGTCTCTATGTATCAGCACTTGAGGAAATACCATCG
GACATTTCTCGACTTTCTGACAAAACAAAAAGCAGTATCGACACTACTGCATCTCAAATA
TCTGTGGTAAGCTCATCATCTTCGTTAGAATCACAAAATGAAATTGATGATACAGAATGG
GTTGATCGAAAATTACCTCCAGGAGTTCAGCATTTTGATCGTGAAAATTGGAATGATCAA
TTTCAAGTTGCACATTATGCAATGGACATTTTTGAATATTTGCGCAATCAAGAGCCTAAG
TATCAAATTAAAGACTATATGAATGAACAACCAGAATTATCAAAGTGGATGCGATCATTA
TTAGTTGACTGGATGGTTGAAGTCCAGGAGAGTTTTGAATTAAATCATGAAACACTATAT
CTTGCAATCAAAATTGTCGATACATATTTGGGAAAAGAAGTTGTTTCGAAAGATTCACTT
CAATTACTTAGAGCTGCAGCTTTGTTAATTGCATGTAAATATGACGAACGTGTACCGCCT
CTCGTTGAAGATTTTCTATTTATTTGTGATGGAGCATATAAGCGTTCTCAGTTATTAAAA
ATGGAAATGAATGTTTTCCGCGCCATAAATTTTGACTTGGCTTTTCCACTATCCTATCGT
TTTTTACGTCGTTATGCTCGATGCGGAAAAGTGTCGATGCAAACATTGACTTTGGCTCGC
TTCATCCTCGAATATTCGCTAATGGAATATTCAACAATTTTGCTATCAGATTCAAAAATG
GCATGTGCTGCGCTTTTCATTGCTCTTCGCATGAATCACGCTGAAGGGTGGAACGCGAGC
TATGAATATTACTCAGGATATAAATTGATTGATTTCGCTCCGATTGTTGTGCTTCTTAAC
ACATTGCTACATAAAAAACCAAAGGAGACTACCAGTACAGTTAGGAACAAATACTCTCAC
ACTATATTTCATAAGGTAACAGCAATACCATTGATGGACATTAACACATTATTTGAAAAG
TATCCAGATATAACTGAAAAATTCGCAACTACTCCATTAACATATCAAACTGTTGTGGCT
ACATGCTCATCGTCCTCGTTATCGGATTCTGAGAGCAGCAGAAAAGCAGCTAAAAAGTAT
CATCAAGCCAGTACAATAAAATTTCCTCTCAAGTCTATGCCATTACCATTTATTCGCTAA
>g7973.t1 Gene=g7973 Length=539
MATTRASMNIAANSKKAITGKRKAEASPLKNDRVKRCALTNLTNNLKNETEDISKKAVLK
DIQPVSYRTRAAAAAATTTNPIELVAPIKPIAKPQKKQPKTINENLDKNLKNKAIATTVV
KSKSTGEITGKQSISTRRISNEFERTEDSLYVSALEEIPSDISRLSDKTKSSIDTTASQI
SVVSSSSSLESQNEIDDTEWVDRKLPPGVQHFDRENWNDQFQVAHYAMDIFEYLRNQEPK
YQIKDYMNEQPELSKWMRSLLVDWMVEVQESFELNHETLYLAIKIVDTYLGKEVVSKDSL
QLLRAAALLIACKYDERVPPLVEDFLFICDGAYKRSQLLKMEMNVFRAINFDLAFPLSYR
FLRRYARCGKVSMQTLTLARFILEYSLMEYSTILLSDSKMACAALFIALRMNHAEGWNAS
YEYYSGYKLIDFAPIVVLLNTLLHKKPKETTSTVRNKYSHTIFHKVTAIPLMDINTLFEK
YPDITEKFATTPLTYQTVVATCSSSSLSDSESSRKAAKKYHQASTIKFPLKSMPLPFIR
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 12 | g7973.t1 | CDD | cd00043 | CYCLIN | 257 | 345 | 4e-07 |
| 13 | g7973.t1 | CDD | cd00043 | CYCLIN | 356 | 427 | 0e+00 |
| 11 | g7973.t1 | Gene3D | G3DSA:1.10.472.10 | - | 229 | 467 | 0e+00 |
| 10 | g7973.t1 | Gene3D | G3DSA:1.10.472.10 | - | 243 | 354 | 0e+00 |
| 3 | g7973.t1 | PANTHER | PTHR10177:SF214 | G2/MITOTIC-SPECIFIC CYCLIN-B3 | 35 | 477 | 0e+00 |
| 4 | g7973.t1 | PANTHER | PTHR10177 | CYCLINS | 35 | 477 | 0e+00 |
| 1 | g7973.t1 | Pfam | PF00134 | Cyclin, N-terminal domain | 229 | 353 | 0e+00 |
| 2 | g7973.t1 | Pfam | PF02984 | Cyclin, C-terminal domain | 356 | 469 | 0e+00 |
| 9 | g7973.t1 | SMART | SM00385 | cyclin_7 | 263 | 347 | 0e+00 |
| 7 | g7973.t1 | SMART | SM01332 | Cyclin_C_2 | 356 | 472 | 0e+00 |
| 8 | g7973.t1 | SMART | SM00385 | cyclin_7 | 360 | 444 | 0e+00 |
| 5 | g7973.t1 | SUPERFAMILY | SSF47954 | Cyclin-like | 217 | 353 | 0e+00 |
| 6 | g7973.t1 | SUPERFAMILY | SSF47954 | Cyclin-like | 356 | 473 | 0e+00 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0010389 | regulation of G2/M transition of mitotic cell cycle | BP |
| GO:0019901 | protein kinase binding | MF |
| GO:0000079 | regulation of cyclin-dependent protein serine/threonine kinase activity | BP |
KEGG
Orthology
- This transcript has been annotated with K21771 (G2/mitotic-specific cyclin-B3)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
