Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Vesicle-fusing ATPase 1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g7985 g7985.t7 isoform g7985.t7 27475051 27475565
chr_2 g7985 g7985.t7 exon g7985.t7.exon1 27475051 27475060
chr_2 g7985 g7985.t7 cds g7985.t7.CDS1 27475051 27475060
chr_2 g7985 g7985.t7 exon g7985.t7.exon2 27475120 27475214
chr_2 g7985 g7985.t7 cds g7985.t7.CDS2 27475120 27475214
chr_2 g7985 g7985.t7 exon g7985.t7.exon3 27475280 27475498
chr_2 g7985 g7985.t7 cds g7985.t7.CDS3 27475280 27475498
chr_2 g7985 g7985.t7 exon g7985.t7.exon4 27475557 27475565
chr_2 g7985 g7985.t7 cds g7985.t7.CDS4 27475557 27475565
chr_2 g7985 g7985.t7 TSS g7985.t7 27475663 27475663
chr_2 g7985 g7985.t7 TTS g7985.t7 NA NA

Sequences

>g7985.t7 Gene=g7985 Length=333
ATGTCAGTTCGAATGAAAGCCACAAAGTGTCCAACTGACGAGCTCTCGTTGAAAAATCGA
GCAATAGTACATCCATCAGATTTTGGAAACAACGAAAATTATGTTGACGTTTCAACTGGT
CCAGGTCAACATTTTATTTTTGCAATTGAAAGGAGTGTTGAAGTTCCACCAAAATTTGTT
GGCTTTTCACTTTTGCAAAGAAAATGGGCTACACTCTCCATTAATCAAGATATTGATGTC
AAACCGTTCCGTTTTGAAGGATCTGGAAATGAACATGTTGTTTGTAATGTTTCATTAGAA
GTTGACTTTTTACAGAAGAAAACCATAACTCAA

>g7985.t7 Gene=g7985 Length=111
MSVRMKATKCPTDELSLKNRAIVHPSDFGNNENYVDVSTGPGQHFIFAIERSVEVPPKFV
GFSLLQRKWATLSINQDIDVKPFRFEGSGNEHVVCNVSLEVDFLQKKTITQ

Protein features from InterProScan

Transcript Database ID Name Start End E.value
5 g7985.t7 Gene3D G3DSA:2.40.40.20 - 2 83 0
2 g7985.t7 PANTHER PTHR23078 VESICULAR-FUSION PROTEIN NSF 1 108 0
1 g7985.t7 Pfam PF02359 Cell division protein 48 (CDC48), N-terminal domain 4 83 0
4 g7985.t7 SMART SM01073 CDC48_N_2 4 86 0
3 g7985.t7 SUPERFAMILY SSF50692 ADC-like 3 86 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0035494 SNARE complex disassembly BP
GO:0016887 ATP hydrolysis activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed