Gene loci information

Transcript annotation

  • This transcript has been annotated as Ankyrin repeat domain-containing protein 50.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g8 g8.t2 isoform g8.t2 108077 114645
chr_3 g8 g8.t2 exon g8.t2.exon1 108077 111559
chr_3 g8 g8.t2 cds g8.t2.CDS1 108077 111559
chr_3 g8 g8.t2 exon g8.t2.exon2 111626 111788
chr_3 g8 g8.t2 cds g8.t2.CDS2 111626 111788
chr_3 g8 g8.t2 exon g8.t2.exon3 111844 112065
chr_3 g8 g8.t2 cds g8.t2.CDS3 111844 112065
chr_3 g8 g8.t2 exon g8.t2.exon4 112154 112207
chr_3 g8 g8.t2 cds g8.t2.CDS4 112154 112207
chr_3 g8 g8.t2 exon g8.t2.exon5 112266 113032
chr_3 g8 g8.t2 cds g8.t2.CDS5 112266 113032
chr_3 g8 g8.t2 exon g8.t2.exon6 113090 113150
chr_3 g8 g8.t2 cds g8.t2.CDS6 113090 113150
chr_3 g8 g8.t2 exon g8.t2.exon7 113212 113493
chr_3 g8 g8.t2 cds g8.t2.CDS7 113212 113493
chr_3 g8 g8.t2 exon g8.t2.exon8 113554 113810
chr_3 g8 g8.t2 cds g8.t2.CDS8 113554 113810
chr_3 g8 g8.t2 exon g8.t2.exon9 114012 114394
chr_3 g8 g8.t2 cds g8.t2.CDS9 114012 114394
chr_3 g8 g8.t2 exon g8.t2.exon10 114462 114645
chr_3 g8 g8.t2 cds g8.t2.CDS10 114462 114645
chr_3 g8 g8.t2 TSS g8.t2 NA NA
chr_3 g8 g8.t2 TTS g8.t2 NA NA

Sequences

>g8.t2 Gene=g8 Length=5856
ATGTCAAAAAATGGCATTTATGAAAATATTACAGAATGCAATGCAGAAATTGGCAATTGC
AGTAACAAAGATTTAGAAGATAATGATGAAAATGAATGTATGCTGTCCAGTTCACCACCA
TTACTAACCAACAGTTCAAAAGAAAAGGATTTATTATCAAAAATGAATAATTTGATGAAC
TATAAAGATGCGCTTTATGCAACTCCTCTGAGAAAATCTGATAGACATAAATCGAGAAAA
TCTCCAGGATTAGATAATGAGAAAATTAGCAATATTAAACATCAAATGAATGGTTTGGAA
GATGCAGAACTAAAAAATCTAATGGATAGAACTTACTTAAATAGTGAATTAGGTGAAAAC
CGAATTAAAGATTTTTTAAAAGACACTGCACACATGCATAAAAAGATCGAACCTCCTGGA
AAAGAGCATATTAATTCAAGTTTCTCATATTTAGCTCGAAAAGAACATTTTGTAAATCTA
GTTCATCAAAATATTCTAAAAGATCAGCCAAGTGAACCAGTATTAAATATTGATTCTCAA
AATGATGAAAGCACACAACATCAACAGCATGAAAAGGATCTTATAAATCTTGATGATTCA
TTGGAAGCATGTGGTGATTTGGATGAAACGGAAAAATTAATAAATAAGCTTGTAGATTTT
CAAAATAAAGTCGCGTTACAAGCTCAACAGCAAAATTCACAACAAACCATTTCAGAATCT
TCACTTCCTACATCCACAATTCGTTTAACTTCTTCGAATAATGTAAGCATCAGTCTTAAT
CGTGAATGGGTATTGAAAAAGATTGCAATGTCACTTGAGCAAAAAGCTCACAAAAAACTT
CCACCTTCATTACCTGAAATTGTAGCTAATGTTAATCAACAACAGTTAATGCAAAATTCA
AATTTACCTGTGGTTGGTTATCTTGTTCTTGGAAGCAGTGGCAGTGGTAAAACATCAATA
TGCAATGATATAATTAATGGAAATAATGGAACCAAAGGAATTCTTAATAGACGTTTATTG
TCGTTTTACTTTGTCAATAGTCAAAATCCTAATTGCCATAGTCTGAGTATTTTTATAAGA
AATATGGCTTTACAAATACTCAGTTTTTCAAGCATATGGCGACAAAATTGTGAGACTGAA
CAAAATGAAAAAAAGGATATGGATAAAAAAGTCGAAATCCCAGTTGATCAGGAACTCGAA
GAAATGATTGAAAATGAAATAAAACTTAATGAGCGTGTTGCAGAATTCGTAGAAATTAAA
AAGCAAATTTTAAGACAACAGTCAGAGCCAGTTGTGGATGAAAATCAAAAATTAATTCAA
GATGACACTTCAAAATATTCAACTCATTCTTTACCTCAGCAAAAACAAAACGAGATGAAA
ATTTCGCCATCTAAAGATGAAAAATGTGATGGTACAAAAAGTGAGAAAAACAGCCCAAGC
AAAAAGATTTCTAAAATACCAATTAAAATTGGCAGCAAAATTAATTCGCCAAATCATTCT
ACAAAAGAACAACCTAAAGAGTCAGTAGATGAATCAATTTCAACAAATGCAGTGACAACT
TCACCAAATGACTCAGATGAATCTATAAAAACTGGTGCCGGTGAAGCCATAGCTGATATT
AATGACCAAAAATTAGAAGAAGATATTGCAAATGAACTTAGAGAGGCAATTGAAGATGAT
ATTACAAAACCAATTGATACTAAAAATGATCAAAAGGAAGATGAACCACATTCAGAAAGA
CCACCACCTTTACCGAGAGAAAAAGATTGTCGAACGTTGTTAGCTGATGCATATTACAAT
CAGCTTACACAAAATCCAGAAATATTTGAATCACTCATTGTGGATAATATTGAGAAAAAT
CCAGATGATTGTTTTAAAAAAGCTATACTATTTCCTTTACTTGAACTCGCAGCACCAAAG
AGTGCATTACTAATGCTTGTCGATTCAATAGATGAAAATTATTTGAATGACGGTACATTG
ATAACAACTCTCAAAGGAAAAAATAACACAAAAAGTAGAAACATTGCTGAATTGCTATCA
AATCACATTCATTTGTTACCTAAATGGCTTTTTCTAGTATGTACAGCAAAGAAACAAAAC
AAGCATATTGTAAAGCTTTTCTCAGGATTCAAAAAATTAACACTTGATGACTTACGAAAG
TCACATGTTGTCAAGGATGTTCAACAGTACATCATTAATCGCTTAAATGTTGATTTTCGA
GGAATAAATTTAACAAAAGAAATTATCGACAATTTAAATCAACTTTACATAAAATCCAAT
GGTTGTTTGTTATATCTACAAAAAGTCCTCATTGCCATTAAGGAAAACTTTTTTACTTTC
CGTGAAATTAAACTTATACCTTGTACTTTATATGGGCTATTTCTTTACCTTTGTCAAAAA
TCGTTTAACAAGAAGCAATTTTTAAAAATCCGCCCGATTTTGAATATTTTACTGGCTTCA
AGTAATCCAGTTGATAAAGAATTTCTCTTTAATTGTTTAAAAACACACAATTATACTATT
GATTATGAAGAATTTGAAAGACGACTGGCATTAATGAAAAATATATTAGAAATTGATGAG
GAACGAGGTACGATAAAAATCTTTCATAATTCATTTTGTGAATGGCTTCTTGATGTCAAA
TTTAGTACTAAAAAGTTTCTTTGTGACATTAATGAAGGTCACTTAATGATAGCGATGTAT
TATACACTCATAACAGAACAATTATGTCCCAATCGAGTACGAGATTATATCTATCATTTG
ATTAAAACAGCCGAATATCTTGCAACTAAAAACACTCAACTTGATGTACTCATGATATTG
CTTGAATCAAGAGCAAATTTAAGTGATTGTTTCTATACAAATTTTCTCAACTGTTGCAAA
AATTGTGAAACTGATTTTGAATATGATATAAATCAATCACAAAGAACACGAACGTTGATG
CAGCTTTATTTATGCAATCAGCTGCAAGGTGACTTTTCATGCTTTATAGGCGACTTTTTC
AAACCTAGTTTACCTACTGATCCAAAAATTCTGAAATTGCTTACGGAAACAGGCATAAAT
AACCTCGACTCACAATTATCATGTGAATCATCAAACGTTAACTCACCACTTCAATCTGAC
AAGTCACAGACTATCGATTCAGAGCTAGCAGAATTGCTAATATCGAGTGAAAAAAGTTGC
AATGTCAATATTGAACAAAAAGTGACAAATGTCGATACATCGATTTCTCAACTTAATCCA
GCCGTCAATGAAAGCTATTTACCAACACAATATGAGAGACTTGATGCTGAAATGCACAAA
GGAAAGGCATTCATTCATGTTTTAGCAAACGATGGCAATCATTTGCTTATGGAACGAGCA
TTGCGCGCATGCAAAGGACCTGTGGATTTAGAAATCGAAGATCATAATGGTCAGACAAGT
TTAAATATTGCAGCTAGGAATGGTCATCTCGAAATTGTTAAACTTTTATTAGATTTTGTT
TGGATTGATCCAATAACAAATCGACGAATGGTTGGTGTAAATGTTAATCATGTTGATAGA
GATGGTTGGTCACCATTAAGAAGCGCAGCTTGGGGTGGTCACACGGAAGTTGTTAAAACT
TTGATAGCACATGAAAAGTGTGAGATTGATAAAGCAGATAAAGAAGGCCGCACAGCTTTA
AGAGCAGCAAGTTGGAGTGGAAATGAAGATATTGTCAGAATTCTTATTGCAGCAAAAGCA
AATGTAAATTCTATTGATAGGCAAGGAAGAACAAGTTTGATTGCTGCAAGCTACATGGGT
CATTATGATATTGTTGAAATTTTACTTGAAAATAATGCCGATGTCAATCATTGTGACCTT
GATGGACGAAATGCACTTTGTGTAGCGGCGTTATGTGGCTCTAGTGGATATTCAAAAGTG
ATCAGCACATTACTTGAATATGGAGCAAATCCAAATCAAACAGATTTGGAAGGCATGAGT
CCATTGCTAGTGAGCTCATTTGAAGGAAATGTTGAAATATGTGAACTGCTACTTGAAAAC
AACGCAGATCCTGATCTAGCTGATAATATGAATAGAACTCCTTTGTGGGCAGCATGCACT
TCTGGTCATTCGCAAGTTGTCAAATTACTTTTATTTTGGGGATGTGGAATTGATTGTATG
GATTCTGATGGAAGAACGTGTCTTTCTGTTGCTGCAGCTCAAGGTAATCTTGAAACAGTT
CGTCAATTATTAGATCGAGGCCTTGATGAAATGCATCGTGATAATAGTGGATGGACGCCT
TTGCATTATGCTGGGTTTGAAGGATATGTTGACGTTTGTCTTCAATTAATTGAATCTGGC
GCTAAGATAGATGAATGCGATAATGAAGGGAAAACAGTTTTACATTTAGCGGCACAAGAA
AATCATAATTCAGTTATACAAGCCATTTTAGAGATTCATAATTTAGAGAGATTTATAGAT
CAAAGAGCACATGATGGCAAAACTGCATTCAGATTAGCATGCTTGGAAAGCAATTTTGAA
TCTATTCAAACATTACTTAAATTTGGATGTGACGTTAACTTGAAGGATACAGATTCGAGA
ACAACTCTCTATATTTTAGCACTTGAAAATAAATTAAAAGTTGTAAAATTTTTATTGGAC
TATTCGAACGTTAATGTAAACATACCAGATTCCGAAGGTAGAACAGCTTTGCATGTTGCA
GCATGGCAGGGACATGTTGAGATGGTAAAATTGCTAATTACAGTTGGAAATGCTGATGTA
AATGCACTAGATTTTGAGAATCGATCACCATTGCATTCTTGTGCATGGCAAGGCAATCAT
GATGTCATGCAAATTTTACTATATTATGGAGCAATTCCTGATCATTCGTGCAAACAAGGC
GCAACGGCATTAGGAATTTCAGCACAAGAAGGACATGAAGAATGTGTCTCACTTCTTCTT
CAATATGGAGCTAATCCATTGAAATCTGATCATTGTCAACGAACACCATACAAATTGGCA
GCTAAATCAAATCGAACCGGAGTTCTAAAAATTTTAGAAAATTATGCAAAAAGTGAGCAT
CATCCAAATCTTCATTTAAAATCACCAGACAAACCACATGAAAAATCAATATTACAACCA
TCACCACATACACCCCAAAATCCAAATTTATTAATGGCCAACAATGTAATTAGTCACATT
CATAATGCGGGAGCTACAACTTCAACTCAGAGTAGTAACTTCTATGAAAATACAATGCAT
TCAGATACAAGCAGTGCAAAAAAGAGAAAAAGTGTTATTTCAAGTCAATCGACAGGAAGC
AGTAATGAGCAGGCTCCAATATCATTTACGCAACAATTACAAAAACACTCTAGGCATCAT
AATTCAAAAACTTCACATGTAGTTCAACAGCAATCTGCAGCAACATCATCAACAGCTACT
GGAGCAAGTAATGGTAAAAAACATACACAAATTTTGCCAAATGTCGATGAATATCAAGCA
AGGAATGTCAATGAAGCAGATTTATTTGAATGTATGTCACCTCTTTACGCATCACCTCCT
CATTCACCGAGCAGTGATTTGAGCTCGCCTCATGATGATCCAACAATGGCAAGTAATAAT
TTAACATCTGTCGACTCGGAACATTTTGCAAGAGATACTCACATGAGAATAATTTTGGGC
AACAATATCAAGGATCAAAAAGAGAAAGAAGCAAAATCAAATAAACGAAGTGGAATCGCA
ACAAATCCAGCAATGCGACTCATACGAAATCGTATTGATTCAGCAGCAAATTTGATACGA
CGAACAAACAATTATATAACCTCAGGCAGTGCAGGCTCTTCAAGCATTGGCGTAAAATCA
AGCACATTTCAATGGAGAAAAGAGAGCCAAATGTAA

>g8.t2 Gene=g8 Length=1951
MSKNGIYENITECNAEIGNCSNKDLEDNDENECMLSSSPPLLTNSSKEKDLLSKMNNLMN
YKDALYATPLRKSDRHKSRKSPGLDNEKISNIKHQMNGLEDAELKNLMDRTYLNSELGEN
RIKDFLKDTAHMHKKIEPPGKEHINSSFSYLARKEHFVNLVHQNILKDQPSEPVLNIDSQ
NDESTQHQQHEKDLINLDDSLEACGDLDETEKLINKLVDFQNKVALQAQQQNSQQTISES
SLPTSTIRLTSSNNVSISLNREWVLKKIAMSLEQKAHKKLPPSLPEIVANVNQQQLMQNS
NLPVVGYLVLGSSGSGKTSICNDIINGNNGTKGILNRRLLSFYFVNSQNPNCHSLSIFIR
NMALQILSFSSIWRQNCETEQNEKKDMDKKVEIPVDQELEEMIENEIKLNERVAEFVEIK
KQILRQQSEPVVDENQKLIQDDTSKYSTHSLPQQKQNEMKISPSKDEKCDGTKSEKNSPS
KKISKIPIKIGSKINSPNHSTKEQPKESVDESISTNAVTTSPNDSDESIKTGAGEAIADI
NDQKLEEDIANELREAIEDDITKPIDTKNDQKEDEPHSERPPPLPREKDCRTLLADAYYN
QLTQNPEIFESLIVDNIEKNPDDCFKKAILFPLLELAAPKSALLMLVDSIDENYLNDGTL
ITTLKGKNNTKSRNIAELLSNHIHLLPKWLFLVCTAKKQNKHIVKLFSGFKKLTLDDLRK
SHVVKDVQQYIINRLNVDFRGINLTKEIIDNLNQLYIKSNGCLLYLQKVLIAIKENFFTF
REIKLIPCTLYGLFLYLCQKSFNKKQFLKIRPILNILLASSNPVDKEFLFNCLKTHNYTI
DYEEFERRLALMKNILEIDEERGTIKIFHNSFCEWLLDVKFSTKKFLCDINEGHLMIAMY
YTLITEQLCPNRVRDYIYHLIKTAEYLATKNTQLDVLMILLESRANLSDCFYTNFLNCCK
NCETDFEYDINQSQRTRTLMQLYLCNQLQGDFSCFIGDFFKPSLPTDPKILKLLTETGIN
NLDSQLSCESSNVNSPLQSDKSQTIDSELAELLISSEKSCNVNIEQKVTNVDTSISQLNP
AVNESYLPTQYERLDAEMHKGKAFIHVLANDGNHLLMERALRACKGPVDLEIEDHNGQTS
LNIAARNGHLEIVKLLLDFVWIDPITNRRMVGVNVNHVDRDGWSPLRSAAWGGHTEVVKT
LIAHEKCEIDKADKEGRTALRAASWSGNEDIVRILIAAKANVNSIDRQGRTSLIAASYMG
HYDIVEILLENNADVNHCDLDGRNALCVAALCGSSGYSKVISTLLEYGANPNQTDLEGMS
PLLVSSFEGNVEICELLLENNADPDLADNMNRTPLWAACTSGHSQVVKLLLFWGCGIDCM
DSDGRTCLSVAAAQGNLETVRQLLDRGLDEMHRDNSGWTPLHYAGFEGYVDVCLQLIESG
AKIDECDNEGKTVLHLAAQENHNSVIQAILEIHNLERFIDQRAHDGKTAFRLACLESNFE
SIQTLLKFGCDVNLKDTDSRTTLYILALENKLKVVKFLLDYSNVNVNIPDSEGRTALHVA
AWQGHVEMVKLLITVGNADVNALDFENRSPLHSCAWQGNHDVMQILLYYGAIPDHSCKQG
ATALGISAQEGHEECVSLLLQYGANPLKSDHCQRTPYKLAAKSNRTGVLKILENYAKSEH
HPNLHLKSPDKPHEKSILQPSPHTPQNPNLLMANNVISHIHNAGATTSTQSSNFYENTMH
SDTSSAKKRKSVISSQSTGSSNEQAPISFTQQLQKHSRHHNSKTSHVVQQQSAATSSTAT
GASNGKKHTQILPNVDEYQARNVNEADLFECMSPLYASPPHSPSSDLSSPHDDPTMASNN
LTSVDSEHFARDTHMRIILGNNIKDQKEKEAKSNKRSGIATNPAMRLIRNRIDSAANLIR
RTNNYITSGSAGSSSIGVKSSTFQWRKESQM

Protein features from InterProScan

Transcript Database ID Name Start End E.value
18 g8.t2 Coils Coil Coil 842 862 -
14 g8.t2 Gene3D G3DSA:1.25.40.20 - 911 1167 3.7E-10
16 g8.t2 Gene3D G3DSA:1.25.40.20 - 1168 1293 2.3E-37
15 g8.t2 Gene3D G3DSA:1.25.40.20 - 1294 1420 1.3E-37
17 g8.t2 Gene3D G3DSA:1.25.40.960 - 1421 1472 3.6E-12
13 g8.t2 Gene3D G3DSA:1.25.40.20 - 1473 1684 1.2E-56
39 g8.t2 MobiDBLite mobidb-lite consensus disorder prediction 430 529 -
42 g8.t2 MobiDBLite mobidb-lite consensus disorder prediction 441 459 -
44 g8.t2 MobiDBLite mobidb-lite consensus disorder prediction 460 482 -
45 g8.t2 MobiDBLite mobidb-lite consensus disorder prediction 510 528 -
36 g8.t2 MobiDBLite mobidb-lite consensus disorder prediction 555 586 -
37 g8.t2 MobiDBLite mobidb-lite consensus disorder prediction 1679 1705 -
41 g8.t2 MobiDBLite mobidb-lite consensus disorder prediction 1679 1697 -
38 g8.t2 MobiDBLite mobidb-lite consensus disorder prediction 1738 1808 -
43 g8.t2 MobiDBLite mobidb-lite consensus disorder prediction 1748 1775 -
46 g8.t2 MobiDBLite mobidb-lite consensus disorder prediction 1784 1808 -
40 g8.t2 MobiDBLite mobidb-lite consensus disorder prediction 1930 1951 -
7 g8.t2 PANTHER PTHR24123:SF118 ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 50-LIKE PROTEIN 578 1951 0.0
8 g8.t2 PANTHER PTHR24123 ANKYRIN REPEAT-CONTAINING 578 1951 0.0
10 g8.t2 PRINTS PR01415 Ankyrin repeat signature 1137 1152 2.1E-5
9 g8.t2 PRINTS PR01415 Ankyrin repeat signature 1264 1278 2.1E-5
6 g8.t2 Pfam PF12796 Ankyrin repeats (3 copies) 1106 1211 3.5E-13
2 g8.t2 Pfam PF13637 Ankyrin repeats (many copies) 1217 1269 8.9E-10
5 g8.t2 Pfam PF12796 Ankyrin repeats (3 copies) 1289 1378 8.2E-13
1 g8.t2 Pfam PF13637 Ankyrin repeats (many copies) 1384 1432 1.3E-7
4 g8.t2 Pfam PF12796 Ankyrin repeats (3 copies) 1493 1582 1.1E-15
3 g8.t2 Pfam PF12796 Ankyrin repeats (3 copies) 1591 1674 3.5E-10
47 g8.t2 ProSiteProfiles PS50297 Ankyrin repeat region circular profile. 1100 1672 126.652
54 g8.t2 ProSiteProfiles PS50088 Ankyrin repeat profile. 1136 1158 10.499
55 g8.t2 ProSiteProfiles PS50088 Ankyrin repeat profile. 1215 1247 11.701
58 g8.t2 ProSiteProfiles PS50088 Ankyrin repeat profile. 1248 1280 11.781
57 g8.t2 ProSiteProfiles PS50088 Ankyrin repeat profile. 1281 1316 9.484
49 g8.t2 ProSiteProfiles PS50088 Ankyrin repeat profile. 1317 1349 11.648
53 g8.t2 ProSiteProfiles PS50088 Ankyrin repeat profile. 1350 1382 9.484
48 g8.t2 ProSiteProfiles PS50088 Ankyrin repeat profile. 1383 1415 11.114
60 g8.t2 ProSiteProfiles PS50088 Ankyrin repeat profile. 1416 1448 11.968
52 g8.t2 ProSiteProfiles PS50088 Ankyrin repeat profile. 1449 1471 9.057
51 g8.t2 ProSiteProfiles PS50088 Ankyrin repeat profile. 1485 1517 11.06
50 g8.t2 ProSiteProfiles PS50088 Ankyrin repeat profile. 1552 1576 11.674
56 g8.t2 ProSiteProfiles PS50088 Ankyrin repeat profile. 1586 1611 9.057
59 g8.t2 ProSiteProfiles PS50088 Ankyrin repeat profile. 1619 1651 10.606
34 g8.t2 SMART SM00248 ANK_2a 920 949 240.0
26 g8.t2 SMART SM00248 ANK_2a 1136 1164 0.16
32 g8.t2 SMART SM00248 ANK_2a 1181 1211 0.066
20 g8.t2 SMART SM00248 ANK_2a 1215 1244 0.0017
33 g8.t2 SMART SM00248 ANK_2a 1248 1277 5.6E-4
29 g8.t2 SMART SM00248 ANK_2a 1281 1313 0.01
27 g8.t2 SMART SM00248 ANK_2a 1317 1346 0.011
35 g8.t2 SMART SM00248 ANK_2a 1350 1379 2.6
25 g8.t2 SMART SM00248 ANK_2a 1383 1413 0.004
24 g8.t2 SMART SM00248 ANK_2a 1416 1445 0.0051
28 g8.t2 SMART SM00248 ANK_2a 1449 1477 1.3
22 g8.t2 SMART SM00248 ANK_2a 1485 1514 0.28
19 g8.t2 SMART SM00248 ANK_2a 1518 1548 0.41
31 g8.t2 SMART SM00248 ANK_2a 1552 1582 2.6E-6
30 g8.t2 SMART SM00248 ANK_2a 1586 1615 0.012
21 g8.t2 SMART SM00248 ANK_2a 1619 1648 0.0042
23 g8.t2 SMART SM00248 ANK_2a 1652 1684 2000.0
12 g8.t2 SUPERFAMILY SSF48403 Ankyrin repeat 1101 1315 1.93E-47
11 g8.t2 SUPERFAMILY SSF48403 Ankyrin repeat 1295 1681 1.85E-90

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005515 protein binding MF

KEGG

Orthology

Pathway

This gene does not belong to any pathways.

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values