General information for g800.t148
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g800 is located on chr_3: 6094101..6095287 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g800 | g800.t148 | isoform | g800.t148 | 6091073 | 6094101 |
| chr_3 | g800 | g800.t148 | exon | g800.t148.exon1 | 6091073 | 6091163 |
| chr_3 | g800 | g800.t148 | exon | g800.t148.exon2 | 6091969 | 6092211 |
| chr_3 | g800 | g800.t148 | cds | g800.t148.CDS1 | 6092066 | 6092211 |
| chr_3 | g800 | g800.t148 | exon | g800.t148.exon3 | 6092270 | 6092367 |
| chr_3 | g800 | g800.t148 | cds | g800.t148.CDS2 | 6092270 | 6092367 |
| chr_3 | g800 | g800.t148 | exon | g800.t148.exon4 | 6092473 | 6092561 |
| chr_3 | g800 | g800.t148 | cds | g800.t148.CDS3 | 6092473 | 6092558 |
| chr_3 | g800 | g800.t148 | exon | g800.t148.exon5 | 6093149 | 6093310 |
| chr_3 | g800 | g800.t148 | exon | g800.t148.exon6 | 6093419 | 6094101 |
| chr_3 | g800 | g800.t148 | TSS | g800.t148 | NA | NA |
| chr_3 | g800 | g800.t148 | TTS | g800.t148 | NA | NA |
Sequences
>g800.t148 Gene=g800 Length=1366
AAGTTTCAATTTGAATTCTGTAAAAAAATATTTTTCACCAATAAAAAAGAAAGGAAAAAT
TACTGTTTGGTTGTTTGTGTAATAAAATGAAGTTTTTCTGTGTTTTTAGTTTTTTTTATT
AATTAATAACGCTTACATTATCAAAAAAAATTTATTCATATTTATAGTTTAAGTGTTTTT
TGTTTTTTCCTCGTTCACAAGAAATCACTTTCTTGTGTGGATAGAAAAAATTGAAAAGAA
TTTTGACACTTGAAAGAAAGTTGTGCAGATCCATGCAAAAATAAGATGTTGGTGTTGAGA
ACACGAGAGAGTAAGAGACAATAAAATATGAAAACTGCAAAAAAGATTTATATTATCTCT
TCTCTACATCGAACATTACACATTATTAAGCACACACGTGGTTCAAGCCTAAACACCTCT
CAATTCTATCATTTAAATATTAACATAAGTAAGATGTTGTTTTTTTAAAGAAAATTTTTC
TTTATATATCAGCAGCAGATTGAATCTCTCTCTCACAATTTGTTGTTTGTCGTTTTATAT
ATTTTAATTTAATTTGATTGATTTTTATTATTTATATATTTTTGATGTTATTTGATCGAA
AAGATGATTGAGTTGTCGGATTTAAGAAAAAATTAATTTAACCTTAACTTATTCTTTTAC
GTCACACATTCTTCGGAGAAACGGAATAAAGTTTAAAAAAGTTTCTTTTTATCAATTTGC
AAAATAAAGATTGTGTCGTTTTTTTTTATTATTTTATTGTGGATGTTGTGCGAATTGGCA
GACAAATTAATTTACTTTTTGTAAATGATTGGATTATCCATCATCTTCTTTAAGAATGCT
GTTTAAAAATGTTGCCTTCGTCATCTTCTGGGTCCATGCAATCAGCGAAAAGCTCGGTAA
CTTCATCATCACTCAATTTCTCACCTGGATATTTAACTGTGTTCCAATTCAGCAATGAGC
ATTGTGCCGTTTTCTTGTTTGTCGTACAATTTCAAACATTCCATGAAATCCTCGTAGCTT
CCTTGTTCCTTTATTTAAAACTTACTTGTGCGAAAATTGGAAGGAATTCTTCAACTGTAA
GTTTCTTCTCACCACGCTTCTTTGTGGCTCCCATCTTCTCGCAAAGTTCAAGAGTTGGGT
TAAGGTTCAAAGCGCGAAGGACGTCTGGAATATCGTAGGCATCAATCTTTCCTGAGCCAT
CACAATCATAGATTCCGAAAGCAAATTCTGCGTCTAAAATTTGTGAATATCATTTGATTA
TTTCATCATGTCTAGCCATTCTGATGTGTGTTCTCTATAGATTGCTTTGGACTCAACAAC
TCAGGATCAAGTTATACAACCGACTAACGATTTCGATCTGAACGCT
>g800.t148 Gene=g800 Length=109
MLPSSSSGSMQSAKSSVTSSSLNFSPGYLTVFQFSNEHCAVFLFVVQFQTFHEILVASLF
LYLKLTCAKIGRNSSTVSFFSPRFFVAPIFSQSSRVGLRFKARRTSGIS
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g800.t148 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - |
| 4 | g800.t148 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 39 | - |
| 5 | g800.t148 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 40 | 63 | - |
| 3 | g800.t148 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 64 | 109 | - |
| 1 | g800.t148 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 41 | 63 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed