Gene loci information

Transcript annotation

  • This transcript has been annotated as UDP-glucuronosyltransferase 2A1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g803 g803.t1 TSS g803.t1 6097493 6097493
chr_3 g803 g803.t1 isoform g803.t1 6097572 6103206
chr_3 g803 g803.t1 exon g803.t1.exon1 6097572 6098185
chr_3 g803 g803.t1 cds g803.t1.CDS1 6097572 6098185
chr_3 g803 g803.t1 exon g803.t1.exon2 6098246 6098857
chr_3 g803 g803.t1 cds g803.t1.CDS2 6098246 6098857
chr_3 g803 g803.t1 exon g803.t1.exon3 6098911 6099155
chr_3 g803 g803.t1 cds g803.t1.CDS3 6098911 6099155
chr_3 g803 g803.t1 exon g803.t1.exon4 6102476 6102523
chr_3 g803 g803.t1 cds g803.t1.CDS4 6102476 6102523
chr_3 g803 g803.t1 exon g803.t1.exon5 6102870 6102990
chr_3 g803 g803.t1 cds g803.t1.CDS5 6102870 6102990
chr_3 g803 g803.t1 exon g803.t1.exon6 6103044 6103206
chr_3 g803 g803.t1 cds g803.t1.CDS6 6103044 6103206
chr_3 g803 g803.t1 TTS g803.t1 6103586 6103586

Sequences

>g803.t1 Gene=g803 Length=1803
ATGCCAGTATTTATTGAAAGTGCTAAAATATTGATAGTGTTCTCAACAATTAGTAAATCC
CATGTGATGCCTTTAGAAGTAGTGGCAAAATTATTAGCCGAAAGAAATCATGAAGTAACT
TTTTTCACTCCATTTCCAAGTGGCAAGGCAATTAAGAACTTAAGAGAGGTTCAAATTCCA
TTCGACGAAAAAGATAAAGAGTTTTTGAATCAAATAGCAAAAAATCCAGAGGATTCAAGT
ATGTTTACAATGATGAAAGAAATGCCGAAGCTTATTACTAAAACTGGAAATACAACTTTA
CAATTGCCTGAAATGAGAAGAATAATGAAGGAAGAAAAGTTTGACCTTTTAATTAATGGT
TACTTCATGACAGAATTTATTCTTGGCCTTGGCGATCATTTTAAAGTGCCAACTATTGTA
TTTTCACCTGCTGGAGCGTTAGGAAATATTCATAGAATGTTAGGTAATCCGCTTTCACCT
TCTGGTGCACCACATGTTTTAGCGCAATCTGTGGAATTTAATTTCGTTGGAAGAATCAAA
AACTTCTTTATGAACATTATCGATGTATTGGTAATGAGACAAATTGCCAATTACATTGGC
AAAGAAGTTTACAACTATAATTTTCCTCCTGATCAGTATCGTTCATATGAAGAGTCATTA
AGAAACGTTTCTCTCGTACTTCTCAACACGCATTTTAGTTCTGCAAGACCTCGTCCTTAT
TTACCAAATATGATTGAAGTTGGTGGCCTTCAAGTGAAACCAAATCCAAGTCCTTTGCCT
AATGATCTCAAAACATTCCTTGATGAAGCTGAAGATGGTGCAATTTTATTTAGTTTAGGT
TCAAATGCAAAAAGCACTTTTCTGCCAGAGAATACGATCAAAACTTTACTCAAAGCTTTT
TCACAGATAAAACAGAGAGTTGTAATGAAATGGGAATCAGATACACTTAAAGGAAAACCT
GAAAATGTTTTCATTAGCAAATGGTTACCACAAGATGATGTTTTAGCACATAAAAATATA
AAATTGTTCATTTCACATTGTGGCTTTGGTGGACTTATTGAAGCTAAATATCATGGCGTT
CCTATTCTTGGTATTCCATTATTTGCTGACCAACCAGCTAATGCTGACATGATTGAAAAA
GAAGGATGGGGTAAACAAATTTCAATAAATACAATCACAGCTGATGAGCTTAGGGATACA
ATAAATGAAATGATCACAAATCCAAAATATGCAAATGTTGTTAAGCAATTATCACTCTTA
GCTAAAGATCGTCCAATGAATGCACAAGAAACAGCAATATATTGGATCGAATATGTCATA
AGACATCATGGAGCACCTCATTTACATTATCCAAGTGCTGATTTAAACTTCTTCCAAGAT
AATTCACTTGATGTTATTGCATTTTTAGTTTTTACTGTTTATGTGATCTTTAAAATTCTT
GCTTTCATTTGTAAAAAGATTTTTTGTGGAACCTTTTGTTATCTTTACATAATCCCTGGT
GAAATAGGAAAAAGTAAAGATCATCCGGGTCATTGTTATTCAAGAGAACATAGTGTATTG
TTAAAAGTAGGCGAAACAACTCATACAAATCAATGTGAAGAAATTTCTTGTTATGATGAT
TATTCAATGAGAATTGCTGGTTGCGGAACATTCTCTATACAAGATCCAAAATGTAAAAAA
TTTATTCGTGATCTATCTAAGCCATATCCAACATGTTGTACATCATTTATTTGCGTAGAA
CCAGTTGATGTTTTTGAAACTTCAAATCACCTTGATCAAGTTGATAGAAATTCATTAGAA
TAA

>g803.t1 Gene=g803 Length=600
MPVFIESAKILIVFSTISKSHVMPLEVVAKLLAERNHEVTFFTPFPSGKAIKNLREVQIP
FDEKDKEFLNQIAKNPEDSSMFTMMKEMPKLITKTGNTTLQLPEMRRIMKEEKFDLLING
YFMTEFILGLGDHFKVPTIVFSPAGALGNIHRMLGNPLSPSGAPHVLAQSVEFNFVGRIK
NFFMNIIDVLVMRQIANYIGKEVYNYNFPPDQYRSYEESLRNVSLVLLNTHFSSARPRPY
LPNMIEVGGLQVKPNPSPLPNDLKTFLDEAEDGAILFSLGSNAKSTFLPENTIKTLLKAF
SQIKQRVVMKWESDTLKGKPENVFISKWLPQDDVLAHKNIKLFISHCGFGGLIEAKYHGV
PILGIPLFADQPANADMIEKEGWGKQISINTITADELRDTINEMITNPKYANVVKQLSLL
AKDRPMNAQETAIYWIEYVIRHHGAPHLHYPSADLNFFQDNSLDVIAFLVFTVYVIFKIL
AFICKKIFCGTFCYLYIIPGEIGKSKDHPGHCYSREHSVLLKVGETTHTNQCEEISCYDD
YSMRIAGCGTFSIQDPKCKKFIRDLSKPYPTCCTSFICVEPVDVFETSNHLDQVDRNSLE

Protein features from InterProScan

Transcript Database ID Name Start End E.value
11 g803.t1 CDD cd03784 GT1_Gtf-like 8 438 1.70475E-73
6 g803.t1 Gene3D G3DSA:3.40.50.2000 Glycogen Phosphorylase B; 8 211 2.6E-12
7 g803.t1 Gene3D G3DSA:3.40.50.2000 Glycogen Phosphorylase B; 254 423 4.2E-47
3 g803.t1 PANTHER PTHR48043:SF10 EG:EG0003.4 PROTEIN-RELATED 16 471 1.6E-116
4 g803.t1 PANTHER PTHR48043 EG:EG0003.4 PROTEIN-RELATED 16 471 1.6E-116
2 g803.t1 Pfam PF00201 UDP-glucoronosyl and UDP-glucosyl transferase 16 487 4.2E-74
1 g803.t1 Pfam PF15430 Single domain von Willebrand factor type C 512 578 5.4E-12
9 g803.t1 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 464 -
10 g803.t1 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 465 484 -
8 g803.t1 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 485 600 -
13 g803.t1 SMART SM01318 SVWC_2 512 578 3.7E-9
5 g803.t1 SUPERFAMILY SSF53756 UDP-Glycosyltransferase/glycogen phosphorylase 9 448 1.7E-105
12 g803.t1 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 465 484 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0008194 UDP-glycosyltransferase activity MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values