General information for g803.t12
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative 2-hydroxyacylsphingosine 1-beta-galactosyltransferase.
Parent gene
- The parent gene g803 is located on chr_3: 6102476..6103584 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g803 | g803.t12 | TSS | g803.t12 | 6097493 | 6097493 |
| chr_3 | g803 | g803.t12 | isoform | g803.t12 | 6098246 | 6098857 |
| chr_3 | g803 | g803.t12 | exon | g803.t12.exon1 | 6098246 | 6098857 |
| chr_3 | g803 | g803.t12 | cds | g803.t12.CDS1 | 6098361 | 6098855 |
| chr_3 | g803 | g803.t12 | TTS | g803.t12 | 6099403 | 6099403 |
Sequences
>g803.t12 Gene=g803 Length=612
CTATAATTTTCCTCCTGATCAGTATCGTTCATATGAAGAGTCATTAAGAAACGTTTCTCT
CGTACTTCTCAACACGCATTTTAGTTCTGCAAGACCTCGTCCTTATTTACCAAATATGAT
TGAAGTTGGTGGCCTTCAAGTGAAACCAAATCCAAGTCCTTTGCCTAATGATCTCAAAAC
ATTCCTTGATGAAGCTGAAGATGGTGCAATTTTATTTAGTTTAGGTTCAAATGCAAAAAG
CACTTTTCTGCCAGAGAATACGATCAAAACTTTACTCAAAGCTTTTTCACAGATAAAACA
GAGAGTTGTAATGAAATGGGAATCAGATACACTTAAAGGAAAACCTGAAAATGTTTTCAT
TAGCAAATGGTTACCACAAGATGATGTTTTAGCACATAAAAATATAAAATTGTTCATTTC
ACATTGTGGCTTTGGTGGACTTATTGAAGCTAAATATCATGGCGTTCCTATTCTTGGTAT
TCCATTATTTGCTGACCAACCAGCTAATGCTGACATGATTGAAAAAGAAGGATGGGGTAA
ACAAATTTCAATAAATACAATCACAGCTGATGAGCTTAGGGATACAATAAATGAAATGAT
CACAAATCCAAA
>g803.t12 Gene=g803 Length=165
MIEVGGLQVKPNPSPLPNDLKTFLDEAEDGAILFSLGSNAKSTFLPENTIKTLLKAFSQI
KQRVVMKWESDTLKGKPENVFISKWLPQDDVLAHKNIKLFISHCGFGGLIEAKYHGVPIL
GIPLFADQPANADMIEKEGWGKQISINTITADELRDTINEMITNP
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g803.t12 | CDD | cd03784 | GT1_Gtf-like | 4 | 165 | 0 |
| 5 | g803.t12 | Gene3D | G3DSA:3.40.50.2000 | Glycogen Phosphorylase B; | 11 | 165 | 0 |
| 2 | g803.t12 | PANTHER | PTHR48043:SF10 | EG:EG0003.4 PROTEIN-RELATED | 1 | 164 | 0 |
| 3 | g803.t12 | PANTHER | PTHR48043 | EG:EG0003.4 PROTEIN-RELATED | 1 | 164 | 0 |
| 1 | g803.t12 | Pfam | PF00201 | UDP-glucoronosyl and UDP-glucosyl transferase | 3 | 165 | 0 |
| 4 | g803.t12 | SUPERFAMILY | SSF53756 | UDP-Glycosyltransferase/glycogen phosphorylase | 1 | 165 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0008194 | UDP-glycosyltransferase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
