Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative V-type proton ATPase subunit G.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g8046 g8046.t5 isoform g8046.t5 28206879 28208066
chr_2 g8046 g8046.t5 exon g8046.t5.exon1 28206879 28207283
chr_2 g8046 g8046.t5 TTS g8046.t5 28206927 28206927
chr_2 g8046 g8046.t5 exon g8046.t5.exon2 28207347 28207564
chr_2 g8046 g8046.t5 cds g8046.t5.CDS1 28207385 28207564
chr_2 g8046 g8046.t5 exon g8046.t5.exon3 28207812 28207912
chr_2 g8046 g8046.t5 cds g8046.t5.CDS2 28207812 28207912
chr_2 g8046 g8046.t5 exon g8046.t5.exon4 28207985 28208066
chr_2 g8046 g8046.t5 cds g8046.t5.CDS3 28207985 28208066
chr_2 g8046 g8046.t5 TSS g8046.t5 28208156 28208156

Sequences

>g8046.t5 Gene=g8046 Length=806
ATGGCAAGTCAAACTCAAGGCATTCAACAATTACTTGCAGCTGAAAAACGTGCAGCAGAA
AAAGTTTCTGAAGCCAGAAAACGTAAACAAAAGCGATTAAAACAAGCAAAAGAAGAAGCT
CAAGATGAAATTGAAAAATATAGACAAGAACGTGAAAGACAATTTAAAGAATTTGAGGCA
AAGCATATGGGATCACGTGAAGGTGTAGCAGCAAAAATTGATGCTGATACAGTAGTCAAA
ATTGAAGACATGACTCGTGCAATACACTCTAATAAGAATTTGGTCATTCAAGATGTTCTC
TCTTTGGTTTATGATATCTCACCCGAAGTTCATAAGAATTATTTATTGAAGATGAAAAAT
TAAATTCCATTACATTATGATGCTGATAATGATTCTTATAAAAAAATACACAATTTATCT
TGTTAAATGAGCGTACATTATTCGCAATACAATAATCGATGTATTTACCTTAATGTTAAT
ATTTAAGCAGATTAATCCCTACAAACATCAAAATTTGCTCCTCTTATTTCAAACATTTAT
CGATCTTTAATTAGTTTAAAAATTCTTTAATTTTTATTATTCTCCACTTCAGCTTCTCTT
GAAATATGACATATAATACACATATTTAGGTGGACGTATAGAGATGAAAAAATCCACGAA
TTTATTATTTCGAATTTCGTTTCGTATTTAAATTTTATTGTGTAATTCTCTATAGATCTT
AGATGAAATAAAGATATAACAAATAATTTAAAAAAATGAATTTAATAGTTTTAAATATTT
GATGATTGAAAACCACTAATATAATC

>g8046.t5 Gene=g8046 Length=120
MASQTQGIQQLLAAEKRAAEKVSEARKRKQKRLKQAKEEAQDEIEKYRQERERQFKEFEA
KHMGSREGVAAKIDADTVVKIEDMTRAIHSNKNLVIQDVLSLVYDISPEVHKNYLLKMKN

Protein features from InterProScan

Transcript Database ID Name Start End E.value
6 g8046.t5 Coils Coil Coil 8 57 -
5 g8046.t5 Gene3D G3DSA:1.20.5.620 F1F0 ATP synthase subunit B 1 60 1.5E-25
4 g8046.t5 MobiDBLite mobidb-lite consensus disorder prediction 19 45 -
2 g8046.t5 PANTHER PTHR12713:SF12 V-TYPE PROTON ATPASE SUBUNIT G 1 1 115 1.6E-34
3 g8046.t5 PANTHER PTHR12713 VACUOLAR ATP SYNTHASE SUBUNIT G 1 115 1.6E-34
1 g8046.t5 Pfam PF03179 Vacuolar (H+)-ATPase G subunit 3 106 9.5E-39
7 g8046.t5 TIGRFAM TIGR01147 V_ATP_synt_G: V-type ATPase, G subunit 1 113 7.7E-48

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:1902600 proton transmembrane transport BP
GO:0042626 ATPase-coupled transmembrane transporter activity MF
GO:0016471 vacuolar proton-transporting V-type ATPase complex CC

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values