Gene loci information

Transcript annotation

  • This transcript has been annotated as 26S proteasome non-ATPase regulatory subunit 6.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g805 g805.t1 TSS g805.t1 6138618 6138618
chr_3 g805 g805.t1 isoform g805.t1 6138709 6139942
chr_3 g805 g805.t1 exon g805.t1.exon1 6138709 6139014
chr_3 g805 g805.t1 cds g805.t1.CDS1 6138709 6139014
chr_3 g805 g805.t1 exon g805.t1.exon2 6139079 6139942
chr_3 g805 g805.t1 cds g805.t1.CDS2 6139079 6139942
chr_3 g805 g805.t1 TTS g805.t1 6140017 6140017

Sequences

>g805.t1 Gene=g805 Length=1170
ATGCCTATCGAAAACTTAGAAGAACAAGGACTTGAAAAGAACCCAAAGTTGGAATTAGCT
CAATATAAATTCCTGCTTACAATGAAAGAGAACCAAAATAATGTTGATTTGAAAACAAAA
TTATTGGAAGAAATTAAAGCTGATAATATGGCACCATGGTATGAAATTGTTTGTGCAGAT
TTAGGTTGGCCTGTTGATCAACAATTACTTGCACAAATGAAAGAAACTAATACAAAGAAG
ATCGAAGAGCTTGATGCTGTAATTGAAGACGCCGAAAAGAATTTGGGAGAAATGGAAGTT
CGTGAGGCAAATTTGAAAAAATCTGAATACTTGTGTCGTATTGGAGACAAAAATGCAGCA
GTTTCTGCTTTTAGAAAAACTTACGAGAAAACAGTTTCGCTTGGTCATAGGTTGGATATT
ATCTTTCACAACATTCGTATAGGATTATTCTTCTTGGATCATGATTTAATCACCCGCAAT
ATTGAGAAAGCAAAAACCTTAATTGAAGAAGGAGGTGATTGGGATAGAAGAAATCGCCTA
AAAGTGTATCAAGGAGTTTATTCAGTTGCAATTCGTGATTTCAAAGCTGCAGCTCAATTC
TTTTTAGATACTGTTAGCACTTTCACTAGCTATGAACTGATGGATTATACAACTTTTGTA
CGATATACTGTTTACACAGCAATCATCAGTTTACCTCGTAATGAATTACGCGATAAAGTA
ATCAAAGGTGCAGAAATTCAAGAAGTACTTCATCAGCTTCCTGATGTAAAGGAATATTTA
TTTTCTCTCTACAACTGTCATTATGCAGAATTTTTTGTTAATCTTACAAAAGTTGAAAGT
TATCTTAAAGCCGATTACATGGCTAATCCACACTATAGATTTTATGTCCGTGAAATGAGA
ATTCTAGCATACACTCAATTGCTCGAGTCATACCGTTCATTGACACTTTCTTATATGGCA
GAAGCTTTTGGTGTTTCTGTAGATTACATTGATGCAGAACTTTCGCGTTTTATTGCTGCT
GGTCGTTTGCACTGTAAAATTGATAAAGTCGGAGGAATTGTCGAAACAAATAGACCTGAC
AGCAAAAACTATCAATATCAGGCAACAATCAAGCAAGGAGATTTATTATTAAATCGCATT
CAAAAACTTAGTCGTGTTATAAATATTTAA

>g805.t1 Gene=g805 Length=389
MPIENLEEQGLEKNPKLELAQYKFLLTMKENQNNVDLKTKLLEEIKADNMAPWYEIVCAD
LGWPVDQQLLAQMKETNTKKIEELDAVIEDAEKNLGEMEVREANLKKSEYLCRIGDKNAA
VSAFRKTYEKTVSLGHRLDIIFHNIRIGLFFLDHDLITRNIEKAKTLIEEGGDWDRRNRL
KVYQGVYSVAIRDFKAAAQFFLDTVSTFTSYELMDYTTFVRYTVYTAIISLPRNELRDKV
IKGAEIQEVLHQLPDVKEYLFSLYNCHYAEFFVNLTKVESYLKADYMANPHYRFYVREMR
ILAYTQLLESYRSLTLSYMAEAFGVSVDYIDAELSRFIAAGRLHCKIDKVGGIVETNRPD
SKNYQYQATIKQGDLLLNRIQKLSRVINI

Protein features from InterProScan

Transcript Database ID Name Start End E.value
9 g805.t1 Coils Coil Coil 74 108 -
8 g805.t1 Gene3D G3DSA:1.25.40.570 - 9 309 9.4E-38
3 g805.t1 PANTHER PTHR14145 26S PROTESOME SUBUNIT 6 8 388 2.7E-170
4 g805.t1 PANTHER PTHR14145:SF1 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 6 8 388 2.7E-170
1 g805.t1 Pfam PF10602 26S proteasome subunit RPN7 66 239 4.1E-60
2 g805.t1 Pfam PF01399 PCI domain 255 357 7.7E-16
10 g805.t1 ProSiteProfiles PS50250 PCI domain profile. 193 361 24.433
6 g805.t1 SMART SM00088 PINT_4 290 373 1.4E-21
7 g805.t1 SMART SM00753 motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 290 373 1.4E-21
5 g805.t1 SUPERFAMILY SSF46785 Winged helix DNA-binding domain 285 366 1.04E-18

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0030234 enzyme regulator activity MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values