Gene loci information

Transcript annotation

  • This transcript has been annotated as Sorbin and SH3 domain-containing protein 2.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g8075 g8075.t1 isoform g8075.t1 28458994 28480151
chr_2 g8075 g8075.t1 exon g8075.t1.exon1 28458994 28459183
chr_2 g8075 g8075.t1 cds g8075.t1.CDS1 28458994 28459183
chr_2 g8075 g8075.t1 exon g8075.t1.exon2 28461616 28461693
chr_2 g8075 g8075.t1 cds g8075.t1.CDS2 28461616 28461693
chr_2 g8075 g8075.t1 exon g8075.t1.exon3 28465730 28466047
chr_2 g8075 g8075.t1 cds g8075.t1.CDS3 28465730 28466047
chr_2 g8075 g8075.t1 exon g8075.t1.exon4 28466151 28466258
chr_2 g8075 g8075.t1 cds g8075.t1.CDS4 28466151 28466258
chr_2 g8075 g8075.t1 exon g8075.t1.exon5 28466318 28466499
chr_2 g8075 g8075.t1 cds g8075.t1.CDS5 28466318 28466499
chr_2 g8075 g8075.t1 exon g8075.t1.exon6 28466565 28466637
chr_2 g8075 g8075.t1 cds g8075.t1.CDS6 28466565 28466637
chr_2 g8075 g8075.t1 exon g8075.t1.exon7 28466845 28466880
chr_2 g8075 g8075.t1 cds g8075.t1.CDS7 28466845 28466880
chr_2 g8075 g8075.t1 exon g8075.t1.exon8 28467063 28467201
chr_2 g8075 g8075.t1 cds g8075.t1.CDS8 28467063 28467201
chr_2 g8075 g8075.t1 exon g8075.t1.exon9 28467257 28467374
chr_2 g8075 g8075.t1 cds g8075.t1.CDS9 28467257 28467374
chr_2 g8075 g8075.t1 exon g8075.t1.exon10 28467687 28467719
chr_2 g8075 g8075.t1 cds g8075.t1.CDS10 28467687 28467719
chr_2 g8075 g8075.t1 exon g8075.t1.exon11 28468598 28468650
chr_2 g8075 g8075.t1 cds g8075.t1.CDS11 28468598 28468650
chr_2 g8075 g8075.t1 exon g8075.t1.exon12 28468710 28468879
chr_2 g8075 g8075.t1 cds g8075.t1.CDS12 28468710 28468879
chr_2 g8075 g8075.t1 exon g8075.t1.exon13 28469541 28473932
chr_2 g8075 g8075.t1 cds g8075.t1.CDS13 28469541 28473932
chr_2 g8075 g8075.t1 exon g8075.t1.exon14 28474165 28474248
chr_2 g8075 g8075.t1 cds g8075.t1.CDS14 28474165 28474248
chr_2 g8075 g8075.t1 exon g8075.t1.exon15 28478721 28479057
chr_2 g8075 g8075.t1 cds g8075.t1.CDS15 28478721 28479057
chr_2 g8075 g8075.t1 exon g8075.t1.exon16 28479200 28479314
chr_2 g8075 g8075.t1 cds g8075.t1.CDS16 28479200 28479314
chr_2 g8075 g8075.t1 exon g8075.t1.exon17 28479397 28479612
chr_2 g8075 g8075.t1 cds g8075.t1.CDS17 28479397 28479612
chr_2 g8075 g8075.t1 exon g8075.t1.exon18 28479676 28479860
chr_2 g8075 g8075.t1 cds g8075.t1.CDS18 28479676 28479860
chr_2 g8075 g8075.t1 exon g8075.t1.exon19 28479920 28480018
chr_2 g8075 g8075.t1 cds g8075.t1.CDS19 28479920 28480018
chr_2 g8075 g8075.t1 exon g8075.t1.exon20 28480079 28480151
chr_2 g8075 g8075.t1 cds g8075.t1.CDS20 28480079 28480151
chr_2 g8075 g8075.t1 TTS g8075.t1 28480599 28480599
chr_2 g8075 g8075.t1 TSS g8075.t1 NA NA

Sequences

>g8075.t1 Gene=g8075 Length=6999
ATGCAGAATAAATTTATTGCTGAACAGCAGCAATTAAAGCAAATGAAACCATTATGTCCA
AAAAAGCCCAAAAAACTCTCAGAAAAATGGCTAAAACAGGAAACTTTCCAAAATAAAAAC
GATACAGATTTGCTGCGAGAAATCGATGACTCGCTGGATGGAAATGCCAAAGGCTTTCTA
TTGAAAAAGGCATCAACAATGATTGAAGCGCCACCGAATCCATTGCCTTATAGAATCGCT
CCAAAATTCAAAGCGACATTTCCTACAGGTATTTGGTCAGAACAAAATCGCTCAGAGGAC
TCGTTAGAGAAGAAACTCGATTCACCACCACCACCAGTTTGGTCACCAAAATCAGCTCCA
GCATCGCCTACAGTTGAGAGGAAATTTAGACCTGTGCCATTTGAGTCACCAACACTTCAG
CGCAAAAAGCATCCATCTATTGAAAGTCCTTCACCACCACCTTGGAATCAGCCTGATTAT
CAGGATAAGCCTTATCAACCATCAATCATAAAAAGCAGCAGCCTTAGCACAATCTCAGCG
CCGCGCATCAAACAGCCAAATCACATCGTATTCAAAAAGGCGAGAGCTGATCAATTTAAT
GAGAAATTTGATAAAGGCATCACATTATCACCAAAAGATAAATCAGTTACATTTAAGACC
GCCTCGCTCAAGCCAAGCAAATCAAATGAATTAGTTTATTCGATAAAACAAAACAGTGAA
ACCAAAGACAGCAACAACAATAATAATAATAATTTTATTAAAACTCAAGAAATAACGACG
ACGAGAAAGATGACAACACAACAACAGCAATCACCAAAGAAAGTCGATGGAGTCGGACCA
ATATCGAAAGAAGGAATACCATTATCACTTCGATCTGAAGTCACAGACGAAAGTCGAGAA
CAATGGTATAAGAAGATGTATAACACTATTCATAAAGCCAAAGATGATGAGAATTATGTG
ACAGTCAAATATAAAACAAGACGAGGAATTCCATACAAATCCAACGGATATGCATCAGAA
CCTGATGCGAATTACGATTCTGACTATGTAATTAAATATAGTAGCGGCAGTAACAATCTA
GACCGGCAACGAACGTTGTCCGCAAGTAACCAAAGTGAAGAGAGATATGGTTCCATAGAA
CAACCTGTCAAGCCAAACGCATGCCAATATAAAAATCAACCAGGTAGAATTGAGAACTAT
ACACCGGGAAAATCGTCTGTATCAGACAAAGAGGCAAAACAGTGGTGGGATGATATTATG
GAAATTTTCGATGGGCATCTCGAACAACAAAAATTGGCATCAAATTATACACAAGGCAAC
CTCTCAAGAGCGCTAAAGGATCAAGGATACCAAAGCGATTCGACGCTAGTCTTTAAAAAG
AAAAGTGATGTAGAGCAATTAAGTCCAGTGCAGCAAAAAATTGCATACAAAAGTTTTCAA
CATGGTGGTGAAGTTCCTCTTCATGGTTTCCGGAAACAAGCACCAGAAAAACCAAAAGAT
GAATGTGAAGACGCTGAGCAAGCTAATCTTGATGGCGTACAAAGCCAAAAGAAAATACCA
CGCGATGAACGTGCGATAATAAATTCTGAAATCATTTGTTATCCTATAACAAACATCACT
AGACCACTGGACATGTTTGGACCGTTTCCAAAAAGTGTCAAGTCATTTGTGCCGGTCGTT
CCACCTCAGCCACCTAATCGTAAATCCTCGCGTACAAATTCAACTTTGAAGATTGTAACG
CACTGGAACAAATCTCCACGGTCGAAGAGCAGCGCTAAGCATGACTCAATGAATGTCAAA
TTCACGACAAGCAGCAACAGCAAGAAATCAACTGAATTGAATCGCTCACGTTCTGCAGGT
CCATCATTCATTTCTACTTTTGTATCTGCTCGCAATTCAGAAGAAAAGAACTCAATGGCA
AAAAGAATTTGTTATCGCGCAAGTTCATCAAGTCCCATTGGACGTAAATTGATTCATGAA
CGTAAAGCCAGTCAAAGTCCAGTTGCCTTTGGTCGTGGCATTTCTAAAGAGCGAGCATTT
GCAGTAGAAAAGAAAAAAGTTGAAGAGAAATTGGCTAAAATCTCAAAGGACTTGCACGTA
AGCACAAGAATCCTTCGAAATCCACAATTACGTTCACCTAATGAAGTTAAGCAAGCTGTA
CAGAATACAATTAGACCAATTGCTTTTGTGAAAGATCCTAAGCTGGCATCATTAATGGTT
AAGAAATCTCTCGAAGGACAGCGTTCTTACCAACAATCAAAAAAATCTGAACAAAAATCG
CTTAAAGTTACAGTAGCCATTTCAACACGTGGAAGAGAAATTTTGCGAACATCAGAAACT
GTGCCACGTAATTTAAGGCAACCATCCAATGTATCAACACTCTCATCTAAATCAAGTTCA
TTGACGAAAAGTGCCGCATCAGACAATACAATCAAAAATAAATTGAAAGTGAAATCAAAA
GGTTCAAATGTTATGAGCTCTACCAATAGCCTGGCACGAACAAATTCAACCTATTCAATC
GATTCGAGCAATTCAAAAAAGAAAACACCCACAGATTTAAAAATTGTCAAAAATGCTCCC
ATCACGATAACAAGTCAGAAATTGAAAAAACCAGCAGCATTAGAAAAAAAGAAAATTGAG
AAACGAGCAAAAACCTTTCAAGATTCCACGTTGGATGATAATCGAAAAGCTGTGGAAGGT
GCTGATGAAACTCTTATCAATTCGAATGAAAATTTAATGAGACAAGAATCTTTCTTCCAA
AATCTTTTTTTGCGTGATAATATTCGCAAATATGGTGCACCAATAAATCCAAGTTCATCA
GTTTTAGAGAAAGCTCGAATATGGAATGCACTTGCAAGTTATAAATCTGAGCCTTCATTG
CGACAGTCGGCAGGCGGTAATTATTTGCATCAATCACGTCCTGTTTCACACTCAAAATTT
CGAGAATTTGAAAAGCGAAATGAATCAGAAGAGTGCTATGCAATTTTCAATCGACCAATA
AATGAAGGTGAACGATTATCGACTCGTGGTGGTTTTGTTATGGAACAAATCTACAAATAC
GATTCACTTTATCAGCTTTCAGATGAGGATGAATTCGGCAATAGCAATCGTGGTCGTTCA
TTGGACTTTTCCTATAGCTATCATGAACGTAGCAACAGCGAACCACCAAATAAAACAACT
GTAATGACCGAGCTAGTGCGTCCTTATTCACCCCTCATAATTTACGGCCGCAATAAATCA
GTCGAGACAGAAAAGCGGCAAAGAACGTCGCGTTCTCCCTCGTGTCGTCGCATACAAAGC
GTAAAGACAAACAAATTACTAGAGTTGAGCTCGTATCAAAAAGAAATAGTGCGTGCACAA
AGTGTGGGTCGCACTGATAGAGTAAAAGAAAAACTTTTCGAAAAAAGCATCAACGAGGCC
GATGACAATAGCATGTATCGCAGCAGATCTCTCAATATTTTAAACTATGAACGTCATTTA
CCAATTTGTGGCCATAAGAAAAATGAGAGATTCCGCGATTTAAAAGAATTTTACTCATGC
CTTGAACGCATCGGCCAACTCGAATGTGCAACATCAAATTCCGATTTACCTCCACGTCGA
CGTAACGAGGAGATTATTGACTATGATTTATGGCAGAAAGTGCGCGAATATGAAAAAAAT
GAACGTGAATTGAATATTTTGGTGAAAAAATTAAGGGCAGAGCAGCGAGATAAGGATTTT
CTATTTCAGCCACATACTGCAGACGAAGTTCGTTGGCGTCCTAACGTTGATCTTGGTCTC
ATGACGAAGGATAAATCTGTAGAGAATTTAAAGGAAATCTTCCAGCAAGAGAATAATGAT
GATGTTGATTATGGTGAAAAAATTGAGCCGAGTGAAGCAAAAAAGCAAAAGAAAAAGAAA
AAAGAAAAAGGAATTTTCGATTCAACTAAAGACAATTATAAACCATTATGGCGAGCAAGT
TCAGTTTTAGATTTGGCCACCAGCATGATTCAGAAATATAATAAATCAAAGAAAAATACC
GCAGGCACAACATCAAAACCGGAAAATGACAAACAAGAGAAGAATTTGGGATTAAGTCGT
AAATTGTTGAGCACATTGTCAAAAGATCAATTGAAAAAGATAAAAAGTCAATTAACTGAA
ATCTATTCATCATCTAATGAAAATAAATCTGGTGGGGAAACTGTGACTAATATTGAATCT
TATGTCGTAACAGTTCCTGCTTCATCCAGTAATGTACAATCGGACAAGTCATTCCTAACT
GTTCGCAGTCATTCAGAATTGACAAAAGATCAAGTTCAAGAACCATCTGTTGATATTACT
ACATTAAAAAATGTTTTTGAAAGCAAATCACCACCAGTAGTACTACCATCAGTTGCTATT
TCTGAAACTGTAAAGCGTTCCATTTCACAGTCATTGAGTCAGGAGTTAAAAGATAAATTT
ACCAGTAAGAAGCAAAAAAATCCTGATATTGAACGTGTCAAAAAGATTGAAAGTAGTCCC
ATAAAAACACTGCCAACACCAAAGAAAGATATTTCATTTTCATTTCATGAAGCACCGCCC
GCTGTCACAAAATATTTAGCTGATAGTCTTCCAACTGCTGCTAAAAAACTAGCACAACCT
GCAAATGAAACTGAAAGCATTTCTTCAGAAACCTCAAATCGAACGGTCATTTTTCGTGAC
TGCGGAACAAGTATGGATGATGTTCAGAATAAAATAAAATATTTTGAAGAAATTGAAAAA
GACAAAGAAAAAGTTGAAACAACAATTTATCACGCACGCGACGATTCATCACCCGATGAG
GAAGAAGACGCGAAAAATAAAGAAAGTGCAGTCTCTACTACTGTTGCTTCCAAAGAAGAA
AAGGTTGCAACGACGGCAGCTATCCCACCGAGAAAGACATTATCACAATCATTCACAGAC
CTCAAAGATTTATTTGGTGAACGCCCGCTGCTGAAATCTAATACCACACTGCGCAGTTCG
AACGAGAACATTGGTGAAAGTCGAAGTTTACTTATGAAGAGATCACGCAGTACGAGTCCT
GATTCAGAGCGATGCTATAAAAGTCTCATTGAATTTGGTGATGTTGAAAAATTAAAAATG
AAATTTGAAAATTATAGCATGACTAGTGCTGACGATGAAAGTTCATGTCACTATATTTTT
AGTGATTCTGAACTAAATAAAGCAAGCAGTGTTAAGCAAAAGACACGTATACGAGGACAC
GAGTACGGAAATGTCTCGCACATCACGCACAAATATGAAATGCAGTCAAAACGAGCACGT
AGCCGCACACGACGAGCTTCACCAATTTTGAAACATTCATTGCGAAAGGATGATATACTA
ATGCCACACATAAATGTTATCAGTAAGACAGCAAGCTTAAAAGATCGTCAAAAAATTTCC
ATTAGCAACAAAGATAGCTTGAACAAGATTGAACCAATTGCGAGCTCGACAGGTGAAGTA
GTCGCTAAAATTAAGCACAAGTTTGAGACACTCGACAGTAATCTTTCACTTATGGGTAAG
ATGTATACATCTGTGCCCGACTTTCGTGAATTAAATGAAATTTCGCCACACCTATCTCAT
TTACCCTACTGTGGGGATTTTACTACACATCAATATCCACGTCCCGAAGATAATAATCGT
TCCATTAATTCACCAGATAAGCGTGTCTCGGGCATAAAACCTCTTCGTAAACGCCCTTCA
TCTGTATCACCCATTACCAACCGTAAAGATCACATTACCAACGTCACAAAGCAATTACGC
GAGATATTCAGTGATGATCAATCGGACACAAGATCGCGTAATCGTTATTTGCCCGATAGA
CAGCTTGCAGACGAATATTTGTGGCAAAAGAAACACATCAAATCATCATCGTCATCAGTT
TCATTCAAAGATATAGATACATTTACACACTCACCAACAACACCCCCATTAGTTCCTATC
AAACACAATTATAATTTAAGCGGCTATTTTTCAGACTCTCAAAAAAAATACGTCGAAAAT
GATGTGAACATTCATTATAAAGTACCAGTTCGTTATGAGTTTAAGCATGCGATACCTGAT
GATGAACTGGCTCGTCAACAAGCAGAGCATATGAAGAAGGTTTATCAAGAGGAGCGTCGA
CGAAAGTATTTACAAGAATTGCAAGATATGAGCAATCGTAGGCACACAGATAATTTTACA
CCATCTCAAAAATCACCCATTGCACTTAATCGTTATGATGATTTTGCATGTGAACCTCCT
TCAAAATCACCTGTCAATCTTCCAGGAACTGTCGCGAGAGCGCTTTATAGTTTTCAAGGA
CAATCAAACAGAGAGCTGTCGTTTAAGAAAGGTGACATAATCTATATCAGACGTCAAATC
GATAAAAACTGGTATGAGGGAGAACATAATGCTATGATTGGACTACTACCCGTACAGTAT
GTAGATATAATTTCAAATGATGGTATACGTCCGCCAATTAGAAAACCGACCGAAGGTCAA
GCTCGAGCCAAATATAATTTTGTAGCACAATCAGATATTGAACTCTCATTAAATAAAGGC
GAACTCGTGTCGCTAACACGTCGTGTCGATGCCAATTGGTTCGAAGGACGCATAGGTGCC
CGCAAGGGAATTTTTCCCGTCTCATATGTTGATGTTCTAACGGACATCGGAAGTGAAGAT
TTGGAAAATAATCTTGTCACAACAACCACAACTACAGTCACTAAATCTTTTATCCCATCA
ACGCCATCACCAATCAGTTTCTCACCAAATTCAGATATCGTCCGCGAAACGAAAACCATA
AGAAAAACTGAAGTTTTACATGTTGATACAGCAAATGAACCCATCACTTATCGTGCAATG
TATAACTATCGACCAGTAAATTCCGATGAATTGGAATTGCGAGAGGGCGATCTTATTTAT
GTACTTGAACAATGCGATGATGGATGGTTTGTTGGAACAAACAGTCGCAATGGTTTCTTC
GGAACTTTCCCAGGCAATTATGTGAAGCGAGTTTATTAA

>g8075.t1 Gene=g8075 Length=2332
MQNKFIAEQQQLKQMKPLCPKKPKKLSEKWLKQETFQNKNDTDLLREIDDSLDGNAKGFL
LKKASTMIEAPPNPLPYRIAPKFKATFPTGIWSEQNRSEDSLEKKLDSPPPPVWSPKSAP
ASPTVERKFRPVPFESPTLQRKKHPSIESPSPPPWNQPDYQDKPYQPSIIKSSSLSTISA
PRIKQPNHIVFKKARADQFNEKFDKGITLSPKDKSVTFKTASLKPSKSNELVYSIKQNSE
TKDSNNNNNNNFIKTQEITTTRKMTTQQQQSPKKVDGVGPISKEGIPLSLRSEVTDESRE
QWYKKMYNTIHKAKDDENYVTVKYKTRRGIPYKSNGYASEPDANYDSDYVIKYSSGSNNL
DRQRTLSASNQSEERYGSIEQPVKPNACQYKNQPGRIENYTPGKSSVSDKEAKQWWDDIM
EIFDGHLEQQKLASNYTQGNLSRALKDQGYQSDSTLVFKKKSDVEQLSPVQQKIAYKSFQ
HGGEVPLHGFRKQAPEKPKDECEDAEQANLDGVQSQKKIPRDERAIINSEIICYPITNIT
RPLDMFGPFPKSVKSFVPVVPPQPPNRKSSRTNSTLKIVTHWNKSPRSKSSAKHDSMNVK
FTTSSNSKKSTELNRSRSAGPSFISTFVSARNSEEKNSMAKRICYRASSSSPIGRKLIHE
RKASQSPVAFGRGISKERAFAVEKKKVEEKLAKISKDLHVSTRILRNPQLRSPNEVKQAV
QNTIRPIAFVKDPKLASLMVKKSLEGQRSYQQSKKSEQKSLKVTVAISTRGREILRTSET
VPRNLRQPSNVSTLSSKSSSLTKSAASDNTIKNKLKVKSKGSNVMSSTNSLARTNSTYSI
DSSNSKKKTPTDLKIVKNAPITITSQKLKKPAALEKKKIEKRAKTFQDSTLDDNRKAVEG
ADETLINSNENLMRQESFFQNLFLRDNIRKYGAPINPSSSVLEKARIWNALASYKSEPSL
RQSAGGNYLHQSRPVSHSKFREFEKRNESEECYAIFNRPINEGERLSTRGGFVMEQIYKY
DSLYQLSDEDEFGNSNRGRSLDFSYSYHERSNSEPPNKTTVMTELVRPYSPLIIYGRNKS
VETEKRQRTSRSPSCRRIQSVKTNKLLELSSYQKEIVRAQSVGRTDRVKEKLFEKSINEA
DDNSMYRSRSLNILNYERHLPICGHKKNERFRDLKEFYSCLERIGQLECATSNSDLPPRR
RNEEIIDYDLWQKVREYEKNERELNILVKKLRAEQRDKDFLFQPHTADEVRWRPNVDLGL
MTKDKSVENLKEIFQQENNDDVDYGEKIEPSEAKKQKKKKKEKGIFDSTKDNYKPLWRAS
SVLDLATSMIQKYNKSKKNTAGTTSKPENDKQEKNLGLSRKLLSTLSKDQLKKIKSQLTE
IYSSSNENKSGGETVTNIESYVVTVPASSSNVQSDKSFLTVRSHSELTKDQVQEPSVDIT
TLKNVFESKSPPVVLPSVAISETVKRSISQSLSQELKDKFTSKKQKNPDIERVKKIESSP
IKTLPTPKKDISFSFHEAPPAVTKYLADSLPTAAKKLAQPANETESISSETSNRTVIFRD
CGTSMDDVQNKIKYFEEIEKDKEKVETTIYHARDDSSPDEEEDAKNKESAVSTTVASKEE
KVATTAAIPPRKTLSQSFTDLKDLFGERPLLKSNTTLRSSNENIGESRSLLMKRSRSTSP
DSERCYKSLIEFGDVEKLKMKFENYSMTSADDESSCHYIFSDSELNKASSVKQKTRIRGH
EYGNVSHITHKYEMQSKRARSRTRRASPILKHSLRKDDILMPHINVISKTASLKDRQKIS
ISNKDSLNKIEPIASSTGEVVAKIKHKFETLDSNLSLMGKMYTSVPDFRELNEISPHLSH
LPYCGDFTTHQYPRPEDNNRSINSPDKRVSGIKPLRKRPSSVSPITNRKDHITNVTKQLR
EIFSDDQSDTRSRNRYLPDRQLADEYLWQKKHIKSSSSSVSFKDIDTFTHSPTTPPLVPI
KHNYNLSGYFSDSQKKYVENDVNIHYKVPVRYEFKHAIPDDELARQQAEHMKKVYQEERR
RKYLQELQDMSNRRHTDNFTPSQKSPIALNRYDDFACEPPSKSPVNLPGTVARALYSFQG
QSNRELSFKKGDIIYIRRQIDKNWYEGEHNAMIGLLPVQYVDIISNDGIRPPIRKPTEGQ
ARAKYNFVAQSDIELSLNKGELVSLTRRVDANWFEGRIGARKGIFPVSYVDVLTDIGSED
LENNLVTTTTTTVTKSFIPSTPSPISFSPNSDIVRETKTIRKTEVLHVDTANEPITYRAM
YNYRPVNSDELELREGDLIYVLEQCDDGWFVGTNSRNGFFGTFPGNYVKRVY

Protein features from InterProScan

Transcript Database ID Name Start End E.value
16 g8075.t1 CDD cd11781 SH3_Sorbs_1 2091 2143 1.78838E-27
17 g8075.t1 CDD cd11782 SH3_Sorbs_2 2160 2212 2.00131E-26
18 g8075.t1 CDD cd11780 SH3_Sorbs_3 2277 2330 2.35403E-31
15 g8075.t1 Coils Coil Coil 1214 1237 -
13 g8075.t1 Gene3D G3DSA:2.30.30.40 SH3 Domains 2086 2148 3.4E-20
12 g8075.t1 Gene3D G3DSA:2.30.30.40 SH3 Domains 2154 2215 3.7E-20
14 g8075.t1 Gene3D G3DSA:2.30.30.40 SH3 Domains 2274 2332 2.6E-25
33 g8075.t1 MobiDBLite mobidb-lite consensus disorder prediction 94 155 -
31 g8075.t1 MobiDBLite mobidb-lite consensus disorder prediction 582 617 -
28 g8075.t1 MobiDBLite mobidb-lite consensus disorder prediction 595 617 -
23 g8075.t1 MobiDBLite mobidb-lite consensus disorder prediction 784 807 -
27 g8075.t1 MobiDBLite mobidb-lite consensus disorder prediction 1281 1304 -
30 g8075.t1 MobiDBLite mobidb-lite consensus disorder prediction 1335 1358 -
24 g8075.t1 MobiDBLite mobidb-lite consensus disorder prediction 1590 1627 -
29 g8075.t1 MobiDBLite mobidb-lite consensus disorder prediction 1590 1608 -
26 g8075.t1 MobiDBLite mobidb-lite consensus disorder prediction 1656 1678 -
32 g8075.t1 MobiDBLite mobidb-lite consensus disorder prediction 1656 1676 -
25 g8075.t1 MobiDBLite mobidb-lite consensus disorder prediction 1870 1904 -
5 g8075.t1 PANTHER PTHR14167:SF64 SORBIN AND SH3 DOMAIN-CONTAINING PROTEIN 1 1906 2213 2.1E-77
7 g8075.t1 PANTHER PTHR14167 SH3 DOMAIN-CONTAINING 1906 2213 2.1E-77
6 g8075.t1 PANTHER PTHR14167:SF64 SORBIN AND SH3 DOMAIN-CONTAINING PROTEIN 1 2260 2332 2.1E-77
8 g8075.t1 PANTHER PTHR14167 SH3 DOMAIN-CONTAINING 2260 2332 2.1E-77
1 g8075.t1 Pfam PF02208 Sorbin homologous domain 274 317 2.9E-10
2 g8075.t1 Pfam PF00018 SH3 domain 2093 2137 1.3E-9
3 g8075.t1 Pfam PF14604 Variant SH3 domain 2163 2210 3.1E-9
4 g8075.t1 Pfam PF14604 Variant SH3 domain 2279 2329 3.7E-15
34 g8075.t1 ProSiteProfiles PS50831 SoHo domain profile. 269 333 9.523
36 g8075.t1 ProSiteProfiles PS50002 Src homology 3 (SH3) domain profile. 2087 2146 23.329
37 g8075.t1 ProSiteProfiles PS50002 Src homology 3 (SH3) domain profile. 2156 2215 21.711
35 g8075.t1 ProSiteProfiles PS50002 Src homology 3 (SH3) domain profile. 2272 2332 25.631
22 g8075.t1 SMART SM00459 sorbin_1 269 320 0.006
21 g8075.t1 SMART SM00326 SH3_2 2090 2145 5.7E-18
19 g8075.t1 SMART SM00326 SH3_2 2159 2214 7.8E-15
20 g8075.t1 SMART SM00326 SH3_2 2275 2332 4.9E-19
10 g8075.t1 SUPERFAMILY SSF50044 SH3-domain 2081 2148 1.44E-19
11 g8075.t1 SUPERFAMILY SSF50044 SH3-domain 2150 2215 1.58E-16
9 g8075.t1 SUPERFAMILY SSF50044 SH3-domain 2273 2330 1.13E-19

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005515 protein binding MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values