General information for g8075.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Sorbin and SH3 domain-containing protein 2.
Parent gene
- The parent gene g8075 is located on chr_2: 28458994..28480151 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8075 | g8075.t2 | isoform | g8075.t2 | 28458994 | 28480151 |
| chr_2 | g8075 | g8075.t2 | exon | g8075.t2.exon1 | 28458994 | 28459183 |
| chr_2 | g8075 | g8075.t2 | cds | g8075.t2.CDS1 | 28458994 | 28459183 |
| chr_2 | g8075 | g8075.t2 | exon | g8075.t2.exon2 | 28461616 | 28461693 |
| chr_2 | g8075 | g8075.t2 | cds | g8075.t2.CDS2 | 28461616 | 28461693 |
| chr_2 | g8075 | g8075.t2 | exon | g8075.t2.exon3 | 28465730 | 28466047 |
| chr_2 | g8075 | g8075.t2 | cds | g8075.t2.CDS3 | 28465730 | 28466047 |
| chr_2 | g8075 | g8075.t2 | exon | g8075.t2.exon4 | 28466151 | 28466258 |
| chr_2 | g8075 | g8075.t2 | cds | g8075.t2.CDS4 | 28466151 | 28466258 |
| chr_2 | g8075 | g8075.t2 | exon | g8075.t2.exon5 | 28466318 | 28466499 |
| chr_2 | g8075 | g8075.t2 | cds | g8075.t2.CDS5 | 28466318 | 28466499 |
| chr_2 | g8075 | g8075.t2 | exon | g8075.t2.exon6 | 28466565 | 28466637 |
| chr_2 | g8075 | g8075.t2 | cds | g8075.t2.CDS6 | 28466565 | 28466637 |
| chr_2 | g8075 | g8075.t2 | exon | g8075.t2.exon7 | 28466845 | 28466880 |
| chr_2 | g8075 | g8075.t2 | cds | g8075.t2.CDS7 | 28466845 | 28466880 |
| chr_2 | g8075 | g8075.t2 | exon | g8075.t2.exon8 | 28467063 | 28467201 |
| chr_2 | g8075 | g8075.t2 | cds | g8075.t2.CDS8 | 28467063 | 28467201 |
| chr_2 | g8075 | g8075.t2 | exon | g8075.t2.exon9 | 28467257 | 28467374 |
| chr_2 | g8075 | g8075.t2 | cds | g8075.t2.CDS9 | 28467257 | 28467374 |
| chr_2 | g8075 | g8075.t2 | exon | g8075.t2.exon10 | 28468598 | 28468650 |
| chr_2 | g8075 | g8075.t2 | cds | g8075.t2.CDS10 | 28468598 | 28468650 |
| chr_2 | g8075 | g8075.t2 | exon | g8075.t2.exon11 | 28468710 | 28468879 |
| chr_2 | g8075 | g8075.t2 | cds | g8075.t2.CDS11 | 28468710 | 28468879 |
| chr_2 | g8075 | g8075.t2 | exon | g8075.t2.exon12 | 28469541 | 28473932 |
| chr_2 | g8075 | g8075.t2 | cds | g8075.t2.CDS12 | 28469541 | 28473932 |
| chr_2 | g8075 | g8075.t2 | exon | g8075.t2.exon13 | 28474165 | 28474248 |
| chr_2 | g8075 | g8075.t2 | cds | g8075.t2.CDS13 | 28474165 | 28474248 |
| chr_2 | g8075 | g8075.t2 | exon | g8075.t2.exon14 | 28478721 | 28479057 |
| chr_2 | g8075 | g8075.t2 | cds | g8075.t2.CDS14 | 28478721 | 28479057 |
| chr_2 | g8075 | g8075.t2 | exon | g8075.t2.exon15 | 28479200 | 28479314 |
| chr_2 | g8075 | g8075.t2 | cds | g8075.t2.CDS15 | 28479200 | 28479314 |
| chr_2 | g8075 | g8075.t2 | exon | g8075.t2.exon16 | 28479397 | 28479612 |
| chr_2 | g8075 | g8075.t2 | cds | g8075.t2.CDS16 | 28479397 | 28479612 |
| chr_2 | g8075 | g8075.t2 | exon | g8075.t2.exon17 | 28479676 | 28479860 |
| chr_2 | g8075 | g8075.t2 | cds | g8075.t2.CDS17 | 28479676 | 28479860 |
| chr_2 | g8075 | g8075.t2 | exon | g8075.t2.exon18 | 28479920 | 28480018 |
| chr_2 | g8075 | g8075.t2 | cds | g8075.t2.CDS18 | 28479920 | 28480018 |
| chr_2 | g8075 | g8075.t2 | exon | g8075.t2.exon19 | 28480079 | 28480151 |
| chr_2 | g8075 | g8075.t2 | cds | g8075.t2.CDS19 | 28480079 | 28480151 |
| chr_2 | g8075 | g8075.t2 | TTS | g8075.t2 | 28480599 | 28480599 |
| chr_2 | g8075 | g8075.t2 | TSS | g8075.t2 | NA | NA |
Sequences
>g8075.t2 Gene=g8075 Length=6966
ATGCAGAATAAATTTATTGCTGAACAGCAGCAATTAAAGCAAATGAAACCATTATGTCCA
AAAAAGCCCAAAAAACTCTCAGAAAAATGGCTAAAACAGGAAACTTTCCAAAATAAAAAC
GATACAGATTTGCTGCGAGAAATCGATGACTCGCTGGATGGAAATGCCAAAGGCTTTCTA
TTGAAAAAGGCATCAACAATGATTGAAGCGCCACCGAATCCATTGCCTTATAGAATCGCT
CCAAAATTCAAAGCGACATTTCCTACAGGTATTTGGTCAGAACAAAATCGCTCAGAGGAC
TCGTTAGAGAAGAAACTCGATTCACCACCACCACCAGTTTGGTCACCAAAATCAGCTCCA
GCATCGCCTACAGTTGAGAGGAAATTTAGACCTGTGCCATTTGAGTCACCAACACTTCAG
CGCAAAAAGCATCCATCTATTGAAAGTCCTTCACCACCACCTTGGAATCAGCCTGATTAT
CAGGATAAGCCTTATCAACCATCAATCATAAAAAGCAGCAGCCTTAGCACAATCTCAGCG
CCGCGCATCAAACAGCCAAATCACATCGTATTCAAAAAGGCGAGAGCTGATCAATTTAAT
GAGAAATTTGATAAAGGCATCACATTATCACCAAAAGATAAATCAGTTACATTTAAGACC
GCCTCGCTCAAGCCAAGCAAATCAAATGAATTAGTTTATTCGATAAAACAAAACAGTGAA
ACCAAAGACAGCAACAACAATAATAATAATAATTTTATTAAAACTCAAGAAATAACGACG
ACGAGAAAGATGACAACACAACAACAGCAATCACCAAAGAAAGTCGATGGAGTCGGACCA
ATATCGAAAGAAGGAATACCATTATCACTTCGATCTGAAGTCACAGACGAAAGTCGAGAA
CAATGGTATAAGAAGATGTATAACACTATTCATAAAGCCAAAGATGATGAGAATTATGTG
ACAGTCAAATATAAAACAAGACGAGGAATTCCATACAAATCCAACGGATATGCATCAGAA
CCTGATGCGAATTACGATTCTGACTATGTAATTAAATATAGTAGCGGCAGTAACAATCTA
GACCGGCAACGAACGTTGTCCGCAAGTAACCAAAGTGAAGAGAGATATGGTTCCATAGAA
CAACCTGTCAAGCCAAACGCATGCCAATATAAAAATCAACCAGGTAGAATTGAGAACTAT
ACACCGGGAAAATCGTCTGTATCAGACAAAGAGGCAAAACAGCATCTCGAACAACAAAAA
TTGGCATCAAATTATACACAAGGCAACCTCTCAAGAGCGCTAAAGGATCAAGGATACCAA
AGCGATTCGACGCTAGTCTTTAAAAAGAAAAGTGATGTAGAGCAATTAAGTCCAGTGCAG
CAAAAAATTGCATACAAAAGTTTTCAACATGGTGGTGAAGTTCCTCTTCATGGTTTCCGG
AAACAAGCACCAGAAAAACCAAAAGATGAATGTGAAGACGCTGAGCAAGCTAATCTTGAT
GGCGTACAAAGCCAAAAGAAAATACCACGCGATGAACGTGCGATAATAAATTCTGAAATC
ATTTGTTATCCTATAACAAACATCACTAGACCACTGGACATGTTTGGACCGTTTCCAAAA
AGTGTCAAGTCATTTGTGCCGGTCGTTCCACCTCAGCCACCTAATCGTAAATCCTCGCGT
ACAAATTCAACTTTGAAGATTGTAACGCACTGGAACAAATCTCCACGGTCGAAGAGCAGC
GCTAAGCATGACTCAATGAATGTCAAATTCACGACAAGCAGCAACAGCAAGAAATCAACT
GAATTGAATCGCTCACGTTCTGCAGGTCCATCATTCATTTCTACTTTTGTATCTGCTCGC
AATTCAGAAGAAAAGAACTCAATGGCAAAAAGAATTTGTTATCGCGCAAGTTCATCAAGT
CCCATTGGACGTAAATTGATTCATGAACGTAAAGCCAGTCAAAGTCCAGTTGCCTTTGGT
CGTGGCATTTCTAAAGAGCGAGCATTTGCAGTAGAAAAGAAAAAAGTTGAAGAGAAATTG
GCTAAAATCTCAAAGGACTTGCACGTAAGCACAAGAATCCTTCGAAATCCACAATTACGT
TCACCTAATGAAGTTAAGCAAGCTGTACAGAATACAATTAGACCAATTGCTTTTGTGAAA
GATCCTAAGCTGGCATCATTAATGGTTAAGAAATCTCTCGAAGGACAGCGTTCTTACCAA
CAATCAAAAAAATCTGAACAAAAATCGCTTAAAGTTACAGTAGCCATTTCAACACGTGGA
AGAGAAATTTTGCGAACATCAGAAACTGTGCCACGTAATTTAAGGCAACCATCCAATGTA
TCAACACTCTCATCTAAATCAAGTTCATTGACGAAAAGTGCCGCATCAGACAATACAATC
AAAAATAAATTGAAAGTGAAATCAAAAGGTTCAAATGTTATGAGCTCTACCAATAGCCTG
GCACGAACAAATTCAACCTATTCAATCGATTCGAGCAATTCAAAAAAGAAAACACCCACA
GATTTAAAAATTGTCAAAAATGCTCCCATCACGATAACAAGTCAGAAATTGAAAAAACCA
GCAGCATTAGAAAAAAAGAAAATTGAGAAACGAGCAAAAACCTTTCAAGATTCCACGTTG
GATGATAATCGAAAAGCTGTGGAAGGTGCTGATGAAACTCTTATCAATTCGAATGAAAAT
TTAATGAGACAAGAATCTTTCTTCCAAAATCTTTTTTTGCGTGATAATATTCGCAAATAT
GGTGCACCAATAAATCCAAGTTCATCAGTTTTAGAGAAAGCTCGAATATGGAATGCACTT
GCAAGTTATAAATCTGAGCCTTCATTGCGACAGTCGGCAGGCGGTAATTATTTGCATCAA
TCACGTCCTGTTTCACACTCAAAATTTCGAGAATTTGAAAAGCGAAATGAATCAGAAGAG
TGCTATGCAATTTTCAATCGACCAATAAATGAAGGTGAACGATTATCGACTCGTGGTGGT
TTTGTTATGGAACAAATCTACAAATACGATTCACTTTATCAGCTTTCAGATGAGGATGAA
TTCGGCAATAGCAATCGTGGTCGTTCATTGGACTTTTCCTATAGCTATCATGAACGTAGC
AACAGCGAACCACCAAATAAAACAACTGTAATGACCGAGCTAGTGCGTCCTTATTCACCC
CTCATAATTTACGGCCGCAATAAATCAGTCGAGACAGAAAAGCGGCAAAGAACGTCGCGT
TCTCCCTCGTGTCGTCGCATACAAAGCGTAAAGACAAACAAATTACTAGAGTTGAGCTCG
TATCAAAAAGAAATAGTGCGTGCACAAAGTGTGGGTCGCACTGATAGAGTAAAAGAAAAA
CTTTTCGAAAAAAGCATCAACGAGGCCGATGACAATAGCATGTATCGCAGCAGATCTCTC
AATATTTTAAACTATGAACGTCATTTACCAATTTGTGGCCATAAGAAAAATGAGAGATTC
CGCGATTTAAAAGAATTTTACTCATGCCTTGAACGCATCGGCCAACTCGAATGTGCAACA
TCAAATTCCGATTTACCTCCACGTCGACGTAACGAGGAGATTATTGACTATGATTTATGG
CAGAAAGTGCGCGAATATGAAAAAAATGAACGTGAATTGAATATTTTGGTGAAAAAATTA
AGGGCAGAGCAGCGAGATAAGGATTTTCTATTTCAGCCACATACTGCAGACGAAGTTCGT
TGGCGTCCTAACGTTGATCTTGGTCTCATGACGAAGGATAAATCTGTAGAGAATTTAAAG
GAAATCTTCCAGCAAGAGAATAATGATGATGTTGATTATGGTGAAAAAATTGAGCCGAGT
GAAGCAAAAAAGCAAAAGAAAAAGAAAAAAGAAAAAGGAATTTTCGATTCAACTAAAGAC
AATTATAAACCATTATGGCGAGCAAGTTCAGTTTTAGATTTGGCCACCAGCATGATTCAG
AAATATAATAAATCAAAGAAAAATACCGCAGGCACAACATCAAAACCGGAAAATGACAAA
CAAGAGAAGAATTTGGGATTAAGTCGTAAATTGTTGAGCACATTGTCAAAAGATCAATTG
AAAAAGATAAAAAGTCAATTAACTGAAATCTATTCATCATCTAATGAAAATAAATCTGGT
GGGGAAACTGTGACTAATATTGAATCTTATGTCGTAACAGTTCCTGCTTCATCCAGTAAT
GTACAATCGGACAAGTCATTCCTAACTGTTCGCAGTCATTCAGAATTGACAAAAGATCAA
GTTCAAGAACCATCTGTTGATATTACTACATTAAAAAATGTTTTTGAAAGCAAATCACCA
CCAGTAGTACTACCATCAGTTGCTATTTCTGAAACTGTAAAGCGTTCCATTTCACAGTCA
TTGAGTCAGGAGTTAAAAGATAAATTTACCAGTAAGAAGCAAAAAAATCCTGATATTGAA
CGTGTCAAAAAGATTGAAAGTAGTCCCATAAAAACACTGCCAACACCAAAGAAAGATATT
TCATTTTCATTTCATGAAGCACCGCCCGCTGTCACAAAATATTTAGCTGATAGTCTTCCA
ACTGCTGCTAAAAAACTAGCACAACCTGCAAATGAAACTGAAAGCATTTCTTCAGAAACC
TCAAATCGAACGGTCATTTTTCGTGACTGCGGAACAAGTATGGATGATGTTCAGAATAAA
ATAAAATATTTTGAAGAAATTGAAAAAGACAAAGAAAAAGTTGAAACAACAATTTATCAC
GCACGCGACGATTCATCACCCGATGAGGAAGAAGACGCGAAAAATAAAGAAAGTGCAGTC
TCTACTACTGTTGCTTCCAAAGAAGAAAAGGTTGCAACGACGGCAGCTATCCCACCGAGA
AAGACATTATCACAATCATTCACAGACCTCAAAGATTTATTTGGTGAACGCCCGCTGCTG
AAATCTAATACCACACTGCGCAGTTCGAACGAGAACATTGGTGAAAGTCGAAGTTTACTT
ATGAAGAGATCACGCAGTACGAGTCCTGATTCAGAGCGATGCTATAAAAGTCTCATTGAA
TTTGGTGATGTTGAAAAATTAAAAATGAAATTTGAAAATTATAGCATGACTAGTGCTGAC
GATGAAAGTTCATGTCACTATATTTTTAGTGATTCTGAACTAAATAAAGCAAGCAGTGTT
AAGCAAAAGACACGTATACGAGGACACGAGTACGGAAATGTCTCGCACATCACGCACAAA
TATGAAATGCAGTCAAAACGAGCACGTAGCCGCACACGACGAGCTTCACCAATTTTGAAA
CATTCATTGCGAAAGGATGATATACTAATGCCACACATAAATGTTATCAGTAAGACAGCA
AGCTTAAAAGATCGTCAAAAAATTTCCATTAGCAACAAAGATAGCTTGAACAAGATTGAA
CCAATTGCGAGCTCGACAGGTGAAGTAGTCGCTAAAATTAAGCACAAGTTTGAGACACTC
GACAGTAATCTTTCACTTATGGGTAAGATGTATACATCTGTGCCCGACTTTCGTGAATTA
AATGAAATTTCGCCACACCTATCTCATTTACCCTACTGTGGGGATTTTACTACACATCAA
TATCCACGTCCCGAAGATAATAATCGTTCCATTAATTCACCAGATAAGCGTGTCTCGGGC
ATAAAACCTCTTCGTAAACGCCCTTCATCTGTATCACCCATTACCAACCGTAAAGATCAC
ATTACCAACGTCACAAAGCAATTACGCGAGATATTCAGTGATGATCAATCGGACACAAGA
TCGCGTAATCGTTATTTGCCCGATAGACAGCTTGCAGACGAATATTTGTGGCAAAAGAAA
CACATCAAATCATCATCGTCATCAGTTTCATTCAAAGATATAGATACATTTACACACTCA
CCAACAACACCCCCATTAGTTCCTATCAAACACAATTATAATTTAAGCGGCTATTTTTCA
GACTCTCAAAAAAAATACGTCGAAAATGATGTGAACATTCATTATAAAGTACCAGTTCGT
TATGAGTTTAAGCATGCGATACCTGATGATGAACTGGCTCGTCAACAAGCAGAGCATATG
AAGAAGGTTTATCAAGAGGAGCGTCGACGAAAGTATTTACAAGAATTGCAAGATATGAGC
AATCGTAGGCACACAGATAATTTTACACCATCTCAAAAATCACCCATTGCACTTAATCGT
TATGATGATTTTGCATGTGAACCTCCTTCAAAATCACCTGTCAATCTTCCAGGAACTGTC
GCGAGAGCGCTTTATAGTTTTCAAGGACAATCAAACAGAGAGCTGTCGTTTAAGAAAGGT
GACATAATCTATATCAGACGTCAAATCGATAAAAACTGGTATGAGGGAGAACATAATGCT
ATGATTGGACTACTACCCGTACAGTATGTAGATATAATTTCAAATGATGGTATACGTCCG
CCAATTAGAAAACCGACCGAAGGTCAAGCTCGAGCCAAATATAATTTTGTAGCACAATCA
GATATTGAACTCTCATTAAATAAAGGCGAACTCGTGTCGCTAACACGTCGTGTCGATGCC
AATTGGTTCGAAGGACGCATAGGTGCCCGCAAGGGAATTTTTCCCGTCTCATATGTTGAT
GTTCTAACGGACATCGGAAGTGAAGATTTGGAAAATAATCTTGTCACAACAACCACAACT
ACAGTCACTAAATCTTTTATCCCATCAACGCCATCACCAATCAGTTTCTCACCAAATTCA
GATATCGTCCGCGAAACGAAAACCATAAGAAAAACTGAAGTTTTACATGTTGATACAGCA
AATGAACCCATCACTTATCGTGCAATGTATAACTATCGACCAGTAAATTCCGATGAATTG
GAATTGCGAGAGGGCGATCTTATTTATGTACTTGAACAATGCGATGATGGATGGTTTGTT
GGAACAAACAGTCGCAATGGTTTCTTCGGAACTTTCCCAGGCAATTATGTGAAGCGAGTT
TATTAA
>g8075.t2 Gene=g8075 Length=2321
MQNKFIAEQQQLKQMKPLCPKKPKKLSEKWLKQETFQNKNDTDLLREIDDSLDGNAKGFL
LKKASTMIEAPPNPLPYRIAPKFKATFPTGIWSEQNRSEDSLEKKLDSPPPPVWSPKSAP
ASPTVERKFRPVPFESPTLQRKKHPSIESPSPPPWNQPDYQDKPYQPSIIKSSSLSTISA
PRIKQPNHIVFKKARADQFNEKFDKGITLSPKDKSVTFKTASLKPSKSNELVYSIKQNSE
TKDSNNNNNNNFIKTQEITTTRKMTTQQQQSPKKVDGVGPISKEGIPLSLRSEVTDESRE
QWYKKMYNTIHKAKDDENYVTVKYKTRRGIPYKSNGYASEPDANYDSDYVIKYSSGSNNL
DRQRTLSASNQSEERYGSIEQPVKPNACQYKNQPGRIENYTPGKSSVSDKEAKQHLEQQK
LASNYTQGNLSRALKDQGYQSDSTLVFKKKSDVEQLSPVQQKIAYKSFQHGGEVPLHGFR
KQAPEKPKDECEDAEQANLDGVQSQKKIPRDERAIINSEIICYPITNITRPLDMFGPFPK
SVKSFVPVVPPQPPNRKSSRTNSTLKIVTHWNKSPRSKSSAKHDSMNVKFTTSSNSKKST
ELNRSRSAGPSFISTFVSARNSEEKNSMAKRICYRASSSSPIGRKLIHERKASQSPVAFG
RGISKERAFAVEKKKVEEKLAKISKDLHVSTRILRNPQLRSPNEVKQAVQNTIRPIAFVK
DPKLASLMVKKSLEGQRSYQQSKKSEQKSLKVTVAISTRGREILRTSETVPRNLRQPSNV
STLSSKSSSLTKSAASDNTIKNKLKVKSKGSNVMSSTNSLARTNSTYSIDSSNSKKKTPT
DLKIVKNAPITITSQKLKKPAALEKKKIEKRAKTFQDSTLDDNRKAVEGADETLINSNEN
LMRQESFFQNLFLRDNIRKYGAPINPSSSVLEKARIWNALASYKSEPSLRQSAGGNYLHQ
SRPVSHSKFREFEKRNESEECYAIFNRPINEGERLSTRGGFVMEQIYKYDSLYQLSDEDE
FGNSNRGRSLDFSYSYHERSNSEPPNKTTVMTELVRPYSPLIIYGRNKSVETEKRQRTSR
SPSCRRIQSVKTNKLLELSSYQKEIVRAQSVGRTDRVKEKLFEKSINEADDNSMYRSRSL
NILNYERHLPICGHKKNERFRDLKEFYSCLERIGQLECATSNSDLPPRRRNEEIIDYDLW
QKVREYEKNERELNILVKKLRAEQRDKDFLFQPHTADEVRWRPNVDLGLMTKDKSVENLK
EIFQQENNDDVDYGEKIEPSEAKKQKKKKKEKGIFDSTKDNYKPLWRASSVLDLATSMIQ
KYNKSKKNTAGTTSKPENDKQEKNLGLSRKLLSTLSKDQLKKIKSQLTEIYSSSNENKSG
GETVTNIESYVVTVPASSSNVQSDKSFLTVRSHSELTKDQVQEPSVDITTLKNVFESKSP
PVVLPSVAISETVKRSISQSLSQELKDKFTSKKQKNPDIERVKKIESSPIKTLPTPKKDI
SFSFHEAPPAVTKYLADSLPTAAKKLAQPANETESISSETSNRTVIFRDCGTSMDDVQNK
IKYFEEIEKDKEKVETTIYHARDDSSPDEEEDAKNKESAVSTTVASKEEKVATTAAIPPR
KTLSQSFTDLKDLFGERPLLKSNTTLRSSNENIGESRSLLMKRSRSTSPDSERCYKSLIE
FGDVEKLKMKFENYSMTSADDESSCHYIFSDSELNKASSVKQKTRIRGHEYGNVSHITHK
YEMQSKRARSRTRRASPILKHSLRKDDILMPHINVISKTASLKDRQKISISNKDSLNKIE
PIASSTGEVVAKIKHKFETLDSNLSLMGKMYTSVPDFRELNEISPHLSHLPYCGDFTTHQ
YPRPEDNNRSINSPDKRVSGIKPLRKRPSSVSPITNRKDHITNVTKQLREIFSDDQSDTR
SRNRYLPDRQLADEYLWQKKHIKSSSSSVSFKDIDTFTHSPTTPPLVPIKHNYNLSGYFS
DSQKKYVENDVNIHYKVPVRYEFKHAIPDDELARQQAEHMKKVYQEERRRKYLQELQDMS
NRRHTDNFTPSQKSPIALNRYDDFACEPPSKSPVNLPGTVARALYSFQGQSNRELSFKKG
DIIYIRRQIDKNWYEGEHNAMIGLLPVQYVDIISNDGIRPPIRKPTEGQARAKYNFVAQS
DIELSLNKGELVSLTRRVDANWFEGRIGARKGIFPVSYVDVLTDIGSEDLENNLVTTTTT
TVTKSFIPSTPSPISFSPNSDIVRETKTIRKTEVLHVDTANEPITYRAMYNYRPVNSDEL
ELREGDLIYVLEQCDDGWFVGTNSRNGFFGTFPGNYVKRVY
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 16 | g8075.t2 | CDD | cd11781 | SH3_Sorbs_1 | 2080 | 2132 | 1.76272E-27 |
| 17 | g8075.t2 | CDD | cd11782 | SH3_Sorbs_2 | 2149 | 2201 | 1.97259E-26 |
| 18 | g8075.t2 | CDD | cd11780 | SH3_Sorbs_3 | 2266 | 2319 | 2.34292E-31 |
| 15 | g8075.t2 | Coils | Coil | Coil | 1203 | 1226 | - |
| 13 | g8075.t2 | Gene3D | G3DSA:2.30.30.40 | SH3 Domains | 2075 | 2137 | 3.3E-20 |
| 12 | g8075.t2 | Gene3D | G3DSA:2.30.30.40 | SH3 Domains | 2143 | 2204 | 3.6E-20 |
| 14 | g8075.t2 | Gene3D | G3DSA:2.30.30.40 | SH3 Domains | 2263 | 2321 | 2.6E-25 |
| 34 | g8075.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 94 | 155 | - |
| 26 | g8075.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 392 | 407 | - |
| 35 | g8075.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 392 | 413 | - |
| 24 | g8075.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 571 | 606 | - |
| 25 | g8075.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 584 | 606 | - |
| 27 | g8075.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 773 | 796 | - |
| 28 | g8075.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1270 | 1293 | - |
| 32 | g8075.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1324 | 1347 | - |
| 30 | g8075.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1579 | 1597 | - |
| 31 | g8075.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1579 | 1616 | - |
| 23 | g8075.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1646 | 1665 | - |
| 33 | g8075.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1646 | 1667 | - |
| 29 | g8075.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1859 | 1893 | - |
| 6 | g8075.t2 | PANTHER | PTHR14167:SF64 | SORBIN AND SH3 DOMAIN-CONTAINING PROTEIN 1 | 1895 | 2202 | 3.5E-77 |
| 8 | g8075.t2 | PANTHER | PTHR14167 | SH3 DOMAIN-CONTAINING | 1895 | 2202 | 3.5E-77 |
| 5 | g8075.t2 | PANTHER | PTHR14167:SF64 | SORBIN AND SH3 DOMAIN-CONTAINING PROTEIN 1 | 2249 | 2321 | 3.5E-77 |
| 7 | g8075.t2 | PANTHER | PTHR14167 | SH3 DOMAIN-CONTAINING | 2249 | 2321 | 3.5E-77 |
| 1 | g8075.t2 | Pfam | PF02208 | Sorbin homologous domain | 274 | 317 | 2.9E-10 |
| 2 | g8075.t2 | Pfam | PF00018 | SH3 domain | 2082 | 2126 | 1.3E-9 |
| 4 | g8075.t2 | Pfam | PF14604 | Variant SH3 domain | 2152 | 2199 | 3.0E-9 |
| 3 | g8075.t2 | Pfam | PF14604 | Variant SH3 domain | 2268 | 2318 | 3.7E-15 |
| 36 | g8075.t2 | ProSiteProfiles | PS50831 | SoHo domain profile. | 269 | 333 | 9.523 |
| 39 | g8075.t2 | ProSiteProfiles | PS50002 | Src homology 3 (SH3) domain profile. | 2076 | 2135 | 23.329 |
| 38 | g8075.t2 | ProSiteProfiles | PS50002 | Src homology 3 (SH3) domain profile. | 2145 | 2204 | 21.711 |
| 37 | g8075.t2 | ProSiteProfiles | PS50002 | Src homology 3 (SH3) domain profile. | 2261 | 2321 | 25.631 |
| 22 | g8075.t2 | SMART | SM00459 | sorbin_1 | 269 | 320 | 0.006 |
| 20 | g8075.t2 | SMART | SM00326 | SH3_2 | 2079 | 2134 | 5.7E-18 |
| 21 | g8075.t2 | SMART | SM00326 | SH3_2 | 2148 | 2203 | 7.8E-15 |
| 19 | g8075.t2 | SMART | SM00326 | SH3_2 | 2264 | 2321 | 4.9E-19 |
| 9 | g8075.t2 | SUPERFAMILY | SSF50044 | SH3-domain | 2070 | 2137 | 1.44E-19 |
| 11 | g8075.t2 | SUPERFAMILY | SSF50044 | SH3-domain | 2139 | 2204 | 1.58E-16 |
| 10 | g8075.t2 | SUPERFAMILY | SSF50044 | SH3-domain | 2262 | 2319 | 1.13E-19 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
KEGG
Orthology
- This transcript has been annotated with K06086 (sorbin and SH3 domain containing protein 1)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
