General information for g809.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative UDP-N-acetylglucosamine transferase subunit ALG14-like protein.
Parent gene
- The parent gene g809 is located on chr_3: 6149749..6151242 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g809 | g809.t1 | TSS | g809.t1 | 6149034 | 6149034 |
| chr_3 | g809 | g809.t1 | isoform | g809.t1 | 6149148 | 6149749 |
| chr_3 | g809 | g809.t1 | exon | g809.t1.exon1 | 6149148 | 6149199 |
| chr_3 | g809 | g809.t1 | cds | g809.t1.CDS1 | 6149148 | 6149199 |
| chr_3 | g809 | g809.t1 | exon | g809.t1.exon2 | 6149259 | 6149749 |
| chr_3 | g809 | g809.t1 | cds | g809.t1.CDS2 | 6149259 | 6149749 |
| chr_3 | g809 | g809.t1 | TTS | g809.t1 | 6149790 | 6149790 |
Sequences
>g809.t1 Gene=g809 Length=543
ATGTATTTAAATGTTAGCGCTGCTAGAACGATGATCATTTTAGGCTCAGGAGGACATACA
ACAGAAATGCTTGAAGTAGTTAAAAAATTAAATAATGAGCGTTATACACCAAGACTGTAT
GTTGTAGCAGAAGGAGATCAGAATTCAGTTGATCGACTGTTAGAAATAGAAAAGGAGGGA
GGAGATTATAAAATTTACACAATAACGAGAAGTAGAAAAGTTCATCAAAGCTATAAATCT
TCAATTATTACTACACTTAAATCAGCTTATGAATGTCTCATTTTATTACTGCACTCTCGA
CCAGATCTCATTTTAGCAAATGGCCCAGCCACATGTGTTCCAGTTTGTGTCGTTGCATTT
TTTCTGAAAGTTTTCTATATCAATGGATCATGTAAAATAGCTTATATTGAGAGTTATTGT
CGTGTCAAGTCATTATCATTATCAGGAAAAATTTTACTTTATCTCACAGACATTTTTGTT
GTTCAGTGGCCAGACATAAGTAAAATATCAAGAAAAATTTTATATTTCGGACGTTTAACA
TGA
>g809.t1 Gene=g809 Length=180
MYLNVSAARTMIILGSGGHTTEMLEVVKKLNNERYTPRLYVVAEGDQNSVDRLLEIEKEG
GDYKIYTITRSRKVHQSYKSSIITTLKSAYECLILLLHSRPDLILANGPATCVPVCVVAF
FLKVFYINGSCKIAYIESYCRVKSLSLSGKILLYLTDIFVVQWPDISKISRKILYFGRLT
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g809.t1 | Gene3D | G3DSA:3.40.50.2000 | Glycogen Phosphorylase B; | 11 | 128 | 8.7E-10 |
| 2 | g809.t1 | PANTHER | PTHR12154 | GLYCOSYL TRANSFERASE-RELATED | 7 | 179 | 2.3E-66 |
| 1 | g809.t1 | Pfam | PF08660 | Oligosaccharide biosynthesis protein Alg14 like | 11 | 179 | 6.5E-63 |
| 4 | g809.t1 | SUPERFAMILY | SSF53756 | UDP-Glycosyltransferase/glycogen phosphorylase | 13 | 124 | 2.83E-5 |
| 3 | g809.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 103 | 125 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006488 | dolichol-linked oligosaccharide biosynthetic process | BP |
KEGG
Orthology
- This transcript has been annotated with K07441 (beta-1,4-N-acetylglucosaminyltransferase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
