General information for g809.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative UDP-N-acetylglucosamine transferase subunit ALG14-like protein.
Parent gene
- The parent gene g809 is located on chr_3: 6149749..6151242 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g809 | g809.t4 | TSS | g809.t4 | 6149034 | 6149034 |
| chr_3 | g809 | g809.t4 | isoform | g809.t4 | 6149148 | 6149749 |
| chr_3 | g809 | g809.t4 | exon | g809.t4.exon1 | 6149148 | 6149203 |
| chr_3 | g809 | g809.t4 | exon | g809.t4.exon2 | 6149259 | 6149749 |
| chr_3 | g809 | g809.t4 | cds | g809.t4.CDS1 | 6149273 | 6149749 |
| chr_3 | g809 | g809.t4 | TTS | g809.t4 | 6149790 | 6149790 |
Sequences
>g809.t4 Gene=g809 Length=547
ATGTATTTAAATGTTAGCGCTGCTAGAACGATGATCATTTTAGGCTCAGGAGGTTTGACA
TACAACAGAAATGCTTGAAGTAGTTAAAAAATTAAATAATGAGCGTTATACACCAAGACT
GTATGTTGTAGCAGAAGGAGATCAGAATTCAGTTGATCGACTGTTAGAAATAGAAAAGGA
GGGAGGAGATTATAAAATTTACACAATAACGAGAAGTAGAAAAGTTCATCAAAGCTATAA
ATCTTCAATTATTACTACACTTAAATCAGCTTATGAATGTCTCATTTTATTACTGCACTC
TCGACCAGATCTCATTTTAGCAAATGGCCCAGCCACATGTGTTCCAGTTTGTGTCGTTGC
ATTTTTTCTGAAAGTTTTCTATATCAATGGATCATGTAAAATAGCTTATATTGAGAGTTA
TTGTCGTGTCAAGTCATTATCATTATCAGGAAAAATTTTACTTTATCTCACAGACATTTT
TGTTGTTCAGTGGCCAGACATAAGTAAAATATCAAGAAAAATTTTATATTTCGGACGTTT
AACATGA
>g809.t4 Gene=g809 Length=158
MLEVVKKLNNERYTPRLYVVAEGDQNSVDRLLEIEKEGGDYKIYTITRSRKVHQSYKSSI
ITTLKSAYECLILLLHSRPDLILANGPATCVPVCVVAFFLKVFYINGSCKIAYIESYCRV
KSLSLSGKILLYLTDIFVVQWPDISKISRKILYFGRLT
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g809.t4 | Gene3D | G3DSA:3.40.50.2000 | Glycogen Phosphorylase B; | 1 | 106 | 6.3E-6 |
| 2 | g809.t4 | PANTHER | PTHR12154 | GLYCOSYL TRANSFERASE-RELATED | 1 | 157 | 1.5E-55 |
| 1 | g809.t4 | Pfam | PF08660 | Oligosaccharide biosynthesis protein Alg14 like | 1 | 157 | 8.4E-53 |
| 3 | g809.t4 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 81 | 103 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006488 | dolichol-linked oligosaccharide biosynthetic process | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed