General information for g8112.t17
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g8112 is located on chr_2: 28638693..28641568 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8112 | g8112.t17 | TSS | g8112.t17 | 28635399 | 28635399 |
| chr_2 | g8112 | g8112.t17 | isoform | g8112.t17 | 28638497 | 28640086 |
| chr_2 | g8112 | g8112.t17 | exon | g8112.t17.exon1 | 28638497 | 28638619 |
| chr_2 | g8112 | g8112.t17 | cds | g8112.t17.CDS1 | 28638499 | 28638619 |
| chr_2 | g8112 | g8112.t17 | exon | g8112.t17.exon2 | 28638687 | 28639070 |
| chr_2 | g8112 | g8112.t17 | cds | g8112.t17.CDS2 | 28638687 | 28639070 |
| chr_2 | g8112 | g8112.t17 | TTS | g8112.t17 | 28639054 | 28639054 |
| chr_2 | g8112 | g8112.t17 | exon | g8112.t17.exon3 | 28639282 | 28639312 |
| chr_2 | g8112 | g8112.t17 | cds | g8112.t17.CDS3 | 28639282 | 28639312 |
| chr_2 | g8112 | g8112.t17 | exon | g8112.t17.exon4 | 28639663 | 28640086 |
| chr_2 | g8112 | g8112.t17 | cds | g8112.t17.CDS4 | 28639663 | 28639768 |
Sequences
>g8112.t17 Gene=g8112 Length=962
AGAGTGGTATTGCTGGCGCTTTAGCTAATTTACAATTAGGAACTGAACGTAGTGCCGAGC
AGCAAGCATACGAAGATCAATTCCGTCGTGCAAATTGGGAATCTGGCCATATCGATTATT
TAGGGCAAGATTCTTTTGCTAATATTTGGAAGAAAATTCAAACAACTATCGAAGCACCAC
CTGCTGAAGTAGTTGAACAACAAGAACGCAGAAGATCACGTTCACGATCAAAAACACCAC
AAAGAGAACCAAGTCCGAAGCCTGTAGAAAAAAAATCGGACGCATCAGCAGCACCAATTG
AACCCGCTAAAGTTGTTGAAGAACCAGTGAAAGTAGCTGCTCCAGTGAAAAAGCAAGAAA
CTGTACCAGCAGCACAAACAAAACCAGTTGCGTCCAAACCTGTTGTATCAGATAAACCAA
CAACAACTTCAAACGCACCTGCATCAATTGCAGCAACAACAACAACAACAGCAGCAGCTC
CTGTAGCACCCAAAAAGAAAGAAGGAGATGACAAAACGCGCAAAAAAACTTCTAAAAAGT
TCTTGCTCATTAGCTTAAAATATTCTTTTCTTCCTATCTCTATCTTATCAAACTCTATCT
CATACATATCGTGCCAGAATTATTTATATTCGAGAATAGTTTAAAGAAAGTAAGATGGGC
AGCATTGAATTGAATGCACTAAGATGAATTGAGACTGTTTTTGCTTTAATTAACTCGAGA
TATTTTTTTATTATAAACATATATATTCAAAAGGAATTTTTGTTAGTGTCATAATTTTTT
CACACATGTGTGTAAGCGTAGATCACTTGTTCATGAGTTTCATTTTTTTCTATTGTCAAT
AAATAAAAGACTTATTTAAAAGTTCATCATTTTTTACATTTATATACATTTAAACCTGAA
TTTTTTGTCAAATTCATTCATAATATCTAATAAACATATTAATAAATCATTTTCATCGAA
TC
>g8112.t17 Gene=g8112 Length=213
SGIAGALANLQLGTERSAEQQAYEDQFRRANWESGHIDYLGQDSFANIWKKIQTTIEAPP
AEVVEQQERRRSRSRSKTPQREPSPKPVEKKSDASAAPIEPAKVVEEPVKVAAPVKKQET
VPAAQTKPVASKPVVSDKPTTTSNAPASIAATTTTTAAAPVAPKKKEGDDKTRKKTSKKF
LLISLKYSFLPISILSNSISYISCQNYLYSRIV
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g8112.t17 | MobiDBLite | mobidb-lite | consensus disorder prediction | 56 | 173 | - |
| 3 | g8112.t17 | MobiDBLite | mobidb-lite | consensus disorder prediction | 63 | 89 | - |
| 1 | g8112.t17 | MobiDBLite | mobidb-lite | consensus disorder prediction | 135 | 159 | - |
| 4 | g8112.t17 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 179 | - |
| 6 | g8112.t17 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 180 | 202 | - |
| 5 | g8112.t17 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 203 | 213 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
