Chromosome | Gene | Transcript | Category | ID | Start | End |
---|---|---|---|---|---|---|
chr_2 | g8116 | g8116.t1 | TSS | g8116.t1 | 28648802 | 28648802 |
chr_2 | g8116 | g8116.t1 | isoform | g8116.t1 | 28648944 | 28650551 |
chr_2 | g8116 | g8116.t1 | exon | g8116.t1.exon1 | 28648944 | 28648999 |
chr_2 | g8116 | g8116.t1 | cds | g8116.t1.CDS1 | 28648944 | 28648999 |
chr_2 | g8116 | g8116.t1 | exon | g8116.t1.exon2 | 28649254 | 28649504 |
chr_2 | g8116 | g8116.t1 | cds | g8116.t1.CDS2 | 28649254 | 28649504 |
chr_2 | g8116 | g8116.t1 | exon | g8116.t1.exon3 | 28649569 | 28649682 |
chr_2 | g8116 | g8116.t1 | cds | g8116.t1.CDS3 | 28649569 | 28649682 |
chr_2 | g8116 | g8116.t1 | exon | g8116.t1.exon4 | 28649735 | 28649819 |
chr_2 | g8116 | g8116.t1 | cds | g8116.t1.CDS4 | 28649735 | 28649819 |
chr_2 | g8116 | g8116.t1 | exon | g8116.t1.exon5 | 28649897 | 28650551 |
chr_2 | g8116 | g8116.t1 | cds | g8116.t1.CDS5 | 28649897 | 28650551 |
chr_2 | g8116 | g8116.t1 | TTS | g8116.t1 | 28651007 | 28651007 |
>g8116.t1 Gene=g8116 Length=1161
ATGATAGTTTGGTACAAGAAAGATATTTTATCAAAAACTCAACTTAAAAAGCTGAGTGAG
CACAAATATAATTGCGAATCAAATAGTGTTTGCGATAAACTTCTACAACCATGGTGGTGT
TATCTTGTTTCAAAAACACCCCTGTTTGTTGCTCCTAATCTTCTAACGATTATTGGACTT
CTTGTTAACATCATCACCTCATTGTTATTGCTTTACCATGCACCTGACGCTAAAGCTGAA
GCACCTCGATGGTGTTATTTATCATGTGCTGTAGGACTTTTTGTTTACCAAAGTCTTGAT
GCTATTGATGGAAAACAAGCTCGTCGCACAAATACATCATCACCACTTGGAGAGTTGTTT
GATCATGGATGTGATTCAATTTCTACAGTTTTTGTAAGCATTGCAGCATGCTGTGCTGGA
GGTCTTGGTCATCATCCGATTGCAATGTTGCTTAATTGTGCAACAGCTATAATTTTATTT
TACGTAGCTCATTGGCAGACATATATAACGGGAGTTTTACGTTTTGGTAAATTTGATGTA
ACAGAAGCACAACTATGTATAATGGCAATACATTTAGTATCATTTTTCTTCGGACCTCAA
GCGTGGCACGTACAAATATTTGGTGGAATTCAATTATGGTTCCTGATGGCTTCTTTTTCA
TTAATTACCGCCTTATTGGTGCTAATAAATTTCGCACAAACGATTAGAAAAGGAGGGATT
GGAAAAAACGGATCGACAGTGGCCGGCACAAGCATCATTGCCCCCATTCTTCCATTTCTT
CTTGTAGTAATACCAGCTTTTATAATTTCTGAAAAATCACGCAGCCAAGTATATCTAAAT
CATCCAGTACTATATTTATTAACATTTGGTGTGCTTGCTGCAAAAGTTTCATGCCGGTTA
GTAGTCGCACATATGAGTAAATCTGAAATGAATTTACTTGACTCTGGACTAGTTGGTCCA
CTCATACTCTTCCTCAATCAATATTTCAATGAGTTCTTTAACGAATATTATATCTTATGG
TTAGCATTTTTGTGGTGCACATACGATTTAATTGGCTATTGTAGTACAGTTTGCCTCGAA
ATGGTTTCCTATCTCAACATTCATCTCTTCAAAATTCCTTACCCGCCAAAAAGTAACAAA
GTTGCTAATTCTAGAAAATAG
>g8116.t1 Gene=g8116 Length=386
MIVWYKKDILSKTQLKKLSEHKYNCESNSVCDKLLQPWWCYLVSKTPLFVAPNLLTIIGL
LVNIITSLLLLYHAPDAKAEAPRWCYLSCAVGLFVYQSLDAIDGKQARRTNTSSPLGELF
DHGCDSISTVFVSIAACCAGGLGHHPIAMLLNCATAIILFYVAHWQTYITGVLRFGKFDV
TEAQLCIMAIHLVSFFFGPQAWHVQIFGGIQLWFLMASFSLITALLVLINFAQTIRKGGI
GKNGSTVAGTSIIAPILPFLLVVIPAFIISEKSRSQVYLNHPVLYLLTFGVLAAKVSCRL
VVAHMSKSEMNLLDSGLVGPLILFLNQYFNEFFNEYYILWLAFLWCTYDLIGYCSTVCLE
MVSYLNIHLFKIPYPPKSNKVANSRK
Transcript | Database | ID | Name | Start | End | E.value | |
---|---|---|---|---|---|---|---|
12 | g8116.t1 | Gene3D | G3DSA:1.20.120.1760 | - | 33 | 231 | 2.0E-15 |
2 | g8116.t1 | PANTHER | PTHR10414:SF27 | CHOLINE/ETHANOLAMINEPHOSPHOTRANSFERASE 1 | 9 | 373 | 3.1E-127 |
3 | g8116.t1 | PANTHER | PTHR10414 | ETHANOLAMINEPHOSPHOTRANSFERASE | 9 | 373 | 3.1E-127 |
32 | g8116.t1 | PIRSF | PIRSF015665 | CHOPT | 6 | 382 | 2.5E-116 |
1 | g8116.t1 | Pfam | PF01066 | CDP-alcohol phosphatidyltransferase | 50 | 125 | 2.2E-17 |
20 | g8116.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 47 | - |
25 | g8116.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 48 | 72 | - |
16 | g8116.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 73 | 83 | - |
29 | g8116.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 84 | 102 | - |
19 | g8116.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 103 | 148 | - |
31 | g8116.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 149 | 173 | - |
15 | g8116.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 174 | 184 | - |
30 | g8116.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 185 | 204 | - |
18 | g8116.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 205 | 209 | - |
23 | g8116.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 210 | 231 | - |
14 | g8116.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 232 | 251 | - |
26 | g8116.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 252 | 270 | - |
21 | g8116.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 271 | 281 | - |
27 | g8116.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 282 | 302 | - |
17 | g8116.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 303 | 310 | - |
24 | g8116.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 311 | 330 | - |
22 | g8116.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 331 | 335 | - |
28 | g8116.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 336 | 362 | - |
13 | g8116.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 363 | 386 | - |
11 | g8116.t1 | ProSitePatterns | PS00379 | CDP-alcohol phosphatidyltransferases signature. | 103 | 125 | - |
4 | g8116.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 49 | 71 | - |
9 | g8116.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 143 | 165 | - |
7 | g8116.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 180 | 197 | - |
10 | g8116.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 210 | 232 | - |
8 | g8116.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 247 | 269 | - |
5 | g8116.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 281 | 303 | - |
6 | g8116.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 337 | 359 | - |
IUPRED3 score over 0.5 is predictive of a disordered region.
GOID | TERM | ONTOLOGY |
---|---|---|
GO:0016020 | membrane | CC |
GO:0008654 | phospholipid biosynthetic process | BP |
GO:0016780 | phosphotransferase activity, for other substituted phosphate groups | MF |
TPM values are indicated as average +/- STDEV.
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.