General information for g812.t20
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g812 is located on chr_3: 6154710..6157730 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g812 | g812.t20 | TTS | g812.t20 | 6154449 | 6154449 |
| chr_3 | g812 | g812.t20 | isoform | g812.t20 | 6154710 | 6157730 |
| chr_3 | g812 | g812.t20 | exon | g812.t20.exon1 | 6154710 | 6155157 |
| chr_3 | g812 | g812.t20 | cds | g812.t20.CDS1 | 6154710 | 6155084 |
| chr_3 | g812 | g812.t20 | exon | g812.t20.exon2 | 6155315 | 6155378 |
| chr_3 | g812 | g812.t20 | exon | g812.t20.exon3 | 6157593 | 6157730 |
| chr_3 | g812 | g812.t20 | TSS | g812.t20 | 6157730 | 6157730 |
Sequences
>g812.t20 Gene=g812 Length=650
AGTTTTCGTTTAGCAGTGAAGCTGTTCGCGTCATAAAAAATAGTTTTTAAATATTGTGTG
ACTCTTTCAAACAATTTTAAAATGATTGCGAAAGTGTTATTTGTTTTGGGAGTTTTAAGT
GCCGCATATGCACAAAAGACACCAGTTTATGTTTATTATGAATCTCTGTGCCCCGACAGT
ATGGCATTCATCACGAAACAGTTCACATTCAAGTTGATTCATTCCAAACTGAACACACTC
GAGAGACTTTAATTGTTGACTACATCACCTGCTTGATGAGTGGTGGTTTTCGTGATCAAC
CATATGCTTTGTATGCAAGAAAATGCGCTGAAGATACTCATGTTAAGAAATTTGAATCAA
TTGAACAATGTGCAAACAGCACTGAAGGTTCAAAATTATTGGAAGAAATGGGTGAAAAAA
CATTCAAGCTCGAAAATCCTTTGAAATCCGTCCCAACAATTACAATCCGCGAGACTTATG
ATGCTCAAATTCAGAAGCAAGCTTTAAATGATTTACCGAGTGCCATTTGTAACAATCTCC
CCAAACCTATTCCAGCAGTTTGTCGAGCACATTCTGGAGCTTCAACTATCTCTGGTGGAA
TCATTGCAGGCATTCTTGCCATTATTATTTCTATTTTCCGTTTCATTTAA
>g812.t20 Gene=g812 Length=124
MSGGFRDQPYALYARKCAEDTHVKKFESIEQCANSTEGSKLLEEMGEKTFKLENPLKSVP
TITIRETYDAQIQKQALNDLPSAICNNLPKPIPAVCRAHSGASTISGGIIAGILAIIISI
FRFI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 1 | g812.t20 | PANTHER | PTHR13234:SF59 | GAMMA-INTERFERON-INDUCIBLE LYSOSOMAL THIOL REDUCTASE-LIKE PROTEIN | 14 | 96 | 4.4E-13 |
| 2 | g812.t20 | PANTHER | PTHR13234 | GAMMA-INTERFERON INDUCIBLE LYSOSOMAL THIOL REDUCTASE GILT | 14 | 96 | 4.4E-13 |
| 5 | g812.t20 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 104 | - |
| 6 | g812.t20 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 105 | 123 | - |
| 4 | g812.t20 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 124 | 124 | - |
| 3 | g812.t20 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 101 | 123 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
