Gene loci information

Transcript annotation

  • This transcript has been annotated as GILT-like protein 1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g812 g812.t5 isoform g812.t5 6154443 6157649
chr_3 g812 g812.t5 exon g812.t5.exon1 6154443 6154560
chr_3 g812 g812.t5 TTS g812.t5 6154449 6154449
chr_3 g812 g812.t5 cds g812.t5.CDS1 6154540 6154560
chr_3 g812 g812.t5 exon g812.t5.exon2 6154803 6155378
chr_3 g812 g812.t5 cds g812.t5.CDS2 6154803 6155378
chr_3 g812 g812.t5 exon g812.t5.exon3 6157593 6157649
chr_3 g812 g812.t5 cds g812.t5.CDS3 6157593 6157649
chr_3 g812 g812.t5 TSS g812.t5 6157730 6157730

Sequences

>g812.t5 Gene=g812 Length=751
ATGATTGCGAAAGTGTTATTTGTTTTGGGAGTTTTAAGTGCCGCATATGCACAAAAGACA
CCAGTTTATGTTTATTATGAATCTCTGTGCCCCGACAGTATGGCATTCATCACGAAACAG
TTATATCCAGCAATGAAAGAATTGAAAGATCATGTCAGTCTTGAGCTCATTCCATTTGGC
AAATCGACATGGAACACACAAGGTTCCGACACAATTTTCAACTGTCATCATGGCCCTGAA
GAATGCTACGGAAATAAAATTCATGCTTGCGCAATCAGTCACATTCAAGTTGATTCATTC
CAAACTGAACACACTCGAGAGACTTTAATTGTTGACTACATCACCTGCTTGATGAGTGGT
GGTTTTCGTGATCAACCATATGCTTTGTATGCAAGAAAATGCGCTGAAGATACTCATGTT
AAGAAATTTGAATCAATTGAACAATGTGCAAACAGCACTGAAGGTTCAAAATTATTGGAA
GAAATGGGTGAAAAAACATTCAAGCTCGAAAATCCTTTGAAATCCGTCCCAACAATTACA
ATCCGCGAGACTTATGATGCTCAAATTCAGAAGCAAGCTTTAAATGATTTACCGAGTGCC
ATTTGTAACAATCTCCCCAAACCTATTCCAGCAAATATATTATTAAGAAGCTAATTAGAT
CTTTTGATTGTCAATGTTGTATTCACATTCCGTATTAAATTTGTGTCCTTAGTGAAGGAA
TAAATAAAGATTGAATTTCAAAAATAAGAAA

>g812.t5 Gene=g812 Length=217
MIAKVLFVLGVLSAAYAQKTPVYVYYESLCPDSMAFITKQLYPAMKELKDHVSLELIPFG
KSTWNTQGSDTIFNCHHGPEECYGNKIHACAISHIQVDSFQTEHTRETLIVDYITCLMSG
GFRDQPYALYARKCAEDTHVKKFESIEQCANSTEGSKLLEEMGEKTFKLENPLKSVPTIT
IRETYDAQIQKQALNDLPSAICNNLPKPIPANILLRS

Protein features from InterProScan

Transcript Database ID Name Start End E.value
3 g812.t5 PANTHER PTHR13234:SF59 GAMMA-INTERFERON-INDUCIBLE LYSOSOMAL THIOL REDUCTASE-LIKE PROTEIN 17 206 1.4E-47
4 g812.t5 PANTHER PTHR13234 GAMMA-INTERFERON INDUCIBLE LYSOSOMAL THIOL REDUCTASE GILT 17 206 1.4E-47
2 g812.t5 Pfam PF03227 Gamma interferon inducible lysosomal thiol reductase (GILT) 22 137 3.6E-31
7 g812.t5 Phobius SIGNAL_PEPTIDE Signal peptide region 1 17 -
8 g812.t5 Phobius SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide. 1 4 -
9 g812.t5 Phobius SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide. 5 12 -
10 g812.t5 Phobius SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide. 13 17 -
6 g812.t5 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 18 217 -
5 g812.t5 SignalP_EUK SignalP-noTM SignalP-noTM 1 17 -
1 g812.t5 SignalP_GRAM_NEGATIVE SignalP-noTM SignalP-noTM 1 17 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed