General information for g8121.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Peroxisome biogenesis factor 2.
Parent gene
- The parent gene g8121 is located on chr_2: 28673729..28674641 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8121 | g8121.t2 | TTS | g8121.t2 | 28673653 | 28673653 |
| chr_2 | g8121 | g8121.t2 | isoform | g8121.t2 | 28673669 | 28674641 |
| chr_2 | g8121 | g8121.t2 | exon | g8121.t2.exon1 | 28673669 | 28674641 |
| chr_2 | g8121 | g8121.t2 | cds | g8121.t2.CDS1 | 28674081 | 28674641 |
| chr_2 | g8121 | g8121.t2 | TSS | g8121.t2 | 28674654 | 28674654 |
Sequences
>g8121.t2 Gene=g8121 Length=973
ATGGAAAACAAAACAGCATATGTTTCAAGAGTTAATCAATTAGATGCATATTTATTAGAC
AAAGAAATAGTTAAAATTATACAGGAACAGCTGTCTCATGCTTACAAAGAATTGCCACCT
GGAATTTTAAGCAAATTTCAACCAGAAATCGATGCATTGCTCAAAACGCTCATTTGGCTT
AATTCTATTTTATTCAATAAATCCACATTTGGTCAACAAATTTTAGCTATTACATATCAA
AGCGATAAACTCACGAGAAACAAATTAATTCTTCATTATTTACTCACGATTCTTGCACCA
TACACTAGAGAATTTGGACATTTGAGGCTTACGAGTAACGTACATTTACAGAAAATAATT
TCTTGGATAGAATTTTGTGCTAAATTGTTAACTATCATCAACTTTTTCCGTTTTCTTAAA
ACTGGTCAATATCCGTCGCTAGTTGATTATTTTGTAAGATGGAAGCATATTTCACAGAGT
GGTGCACAAATGAGAAATTTTGGATATGCATATATGAACCGAGAGTTGATTTGGACTGGT
TTTCTGGTGAGATTTGAATAAGATTAATTTGTAACATGAAACATGTTCCTTTACTTTTTT
ATTTTAGGAATTATTGAATGTGACTCTTCCTTTAGTAAATTATAATGTGATTCAAAGAAA
AATAACACAGTTTTTAACATCGTCACAAAAAAATTGTCAAATTGTTTCTAAAATCAGTCC
AATAATGACTATTGATACAAAATGTGCAATTTGTTCAAAAAGACCTTCAATTCCTCATCA
CATAAATTGTCAGCATGTATTTTGTTACTTTTGCATTCAAGGAAATTTAATGATGGACTC
AGAATTTTCTTGTCCTATCTGTGATACAAAAAATAATGGCAATATTTATCCATTAGAAAT
GAAAATGGAATAATTTAGGGAAAGGTTTATTATAATAAATTACTAATTAACACATGGATT
AAAATTATTAATA
>g8121.t2 Gene=g8121 Length=186
MENKTAYVSRVNQLDAYLLDKEIVKIIQEQLSHAYKELPPGILSKFQPEIDALLKTLIWL
NSILFNKSTFGQQILAITYQSDKLTRNKLILHYLLTILAPYTREFGHLRLTSNVHLQKII
SWIEFCAKLLTIINFFRFLKTGQYPSLVDYFVRWKHISQSGAQMRNFGYAYMNRELIWTG
FLVRFE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g8121.t2 | PANTHER | PTHR23350 | PEROXISOME ASSEMBLY PROTEIN 10 | 4 | 181 | 0 |
| 3 | g8121.t2 | PANTHER | PTHR23350:SF4 | PEROXISOME BIOGENESIS FACTOR 2 | 4 | 181 | 0 |
| 1 | g8121.t2 | Pfam | PF04757 | Pex2 / Pex12 amino terminal region | 20 | 181 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
