General information for g8130.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Autophagy-related protein 2 homolog B.
Parent gene
- The parent gene g8130 is located on chr_2: 28705811..28709967 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8130 | g8130.t2 | isoform | g8130.t2 | 28699454 | 28701735 |
| chr_2 | g8130 | g8130.t2 | exon | g8130.t2.exon1 | 28699454 | 28700291 |
| chr_2 | g8130 | g8130.t2 | TTS | g8130.t2 | 28699469 | 28699469 |
| chr_2 | g8130 | g8130.t2 | cds | g8130.t2.CDS1 | 28700281 | 28700291 |
| chr_2 | g8130 | g8130.t2 | exon | g8130.t2.exon2 | 28700343 | 28700445 |
| chr_2 | g8130 | g8130.t2 | cds | g8130.t2.CDS2 | 28700343 | 28700445 |
| chr_2 | g8130 | g8130.t2 | exon | g8130.t2.exon3 | 28700512 | 28700666 |
| chr_2 | g8130 | g8130.t2 | cds | g8130.t2.CDS3 | 28700512 | 28700666 |
| chr_2 | g8130 | g8130.t2 | exon | g8130.t2.exon4 | 28700738 | 28701735 |
| chr_2 | g8130 | g8130.t2 | cds | g8130.t2.CDS4 | 28700738 | 28701707 |
| chr_2 | g8130 | g8130.t2 | TSS | g8130.t2 | NA | NA |
Sequences
>g8130.t2 Gene=g8130 Length=2094
AAATAGAAGAGCGTTTTCAAATTATCCAATGTCAGAAGTATATAAAATGGGAGTGTCTTA
TTCAAAAGGTTCACCAAGTCTCACATTAGGAGGAAGCAGTCAAAGCAAACTAACTTGGAA
AACAAGAGGTGGTTATGGTAGAAAGCATGATGTTTTAATGGAAATTCATCTTAACAAAGT
TAGATTTTCACATGAAACATATCCTACAACAACAGAACAAGCATCTCGTCAAGTTCTCCT
AATAACAGAACTAGAAATTCGTGATAAATTAGCAATATCAAACATTAATAAATTTCTTTA
TCATCCTACTGTTGGCTTTAGAACTCGTCAAGGAAATAATCATATGGTTGTAGTCAAAGC
ACTGCACATACGACCAGAAAGACAGCTTAAGACACAAGAATGTTGCTTGAGGATTTCTCT
GTTGCCAATTCGTCTCAATATTGATCAAGACTCGTTACTTTTTATGATCAACTTTTTCAA
TGAACTTAGTGGTGGTAGTGATTTAAATGAATCGAAAACAGCTCAAACTGCTGTTGTAGC
GAAAGTTCATCAACCTCCCGTAATGATGGTTGAATTGCCTGAAGCAGCACAGGAACTTCA
AGCTCGTAAAATGGTTTCTGAAAATTTGAGTCTTTTGCTCAATGACGAAAATAAAAACAC
AAAAGATACTTCAGACACGACAAGTGAAACAACTCAATCTGATTCAGCACCTATTTATTT
CCGACAAATAATTTTCAGTCCTGATGTGCCAATAAGACTCGATTATCAAGGCAAGAGAGT
AGAACTATCGCATGGACCACTTGCTGGTCTTCTTATGGGACTTGGCCAACTTCAATGTTC
AGAAATTCGTTTGAAGAAAATATCCTATCGTCATGGGATTTTAGGTGTTGATCGTTTGGT
AAATTTTCTCATTAAGGAATGGCTGGAAGATATTAAAAAAAGACAATTGCCAAATATTCT
TGGGGGTGTTGGCCCAATGTATTCGTTGGTTCAATTATTTCAAGGTATTTTCGATTTGTT
TTATTTACCATTCGAGCAATACCAAAAAGATGGTAGAATTGTAAGAGGTATTCAGCGGGG
CGCACAAAGTTTTTCAGCAAGAACAGCATTAGCAGCATTAGAGATTACTTCGAGGATTAT
TTATTTGTTGCAAATTACAGCTGAATCAGCTTATGATTTGCTTTCGCCAGGGCCTTCTGT
TCGTCGTCGCGTGAACCGTAAAGGGAAACGTAAAAGAATTCATCCACCACAGGTTAGATA
TTCGTGAAGGAATGTCAAATGCATACTACATCGTAAAAGATGGAATTGGCGATACAGCAC
AAACAATTTTACAGATGGCAGCTCTTGAACACGATCAAAAAGGTTATACTGGTGCAGTTG
GTGCAGTTTTAAGACAAGTTCCACCCACAATGGTGCGACCAATAGTTTTGGCAACACAAG
CCTCAAATCAAGTACTCGGCGGTTTAACCAGTCAGCTGATTCCAGATGCAAGAATAGAGG
CAAAAGAGAAGTGGAAAGACGACAGTGATAATTAATTTACATTTAAACGAGTTTTAATTT
AAGACCTTTCGGTTTTTATCAATTATAGAGAATGGCAAGGAAATGAATTTGTCTGGTAGT
GAAAAGAAATAGTAGATGGAGAAAAAAATCATCAGGAAAAAGTTAGTCGTTAGTTGTGTG
TATGAATGAATGTGTTACATGACAGATTTTTTTTATGAATAGTGTATAGATAATTATGAT
TTTCTGGTGATGGCAACTTAAAAACATTTTCTTCGTTCTTTTTTATGAACAAGTGAATTG
ATTATGTTTTTTTTTTAAATTCTTGACATAGAGGTTTCAATGATTTTTTATAGATAGACA
ATGCTTGGTCCAATGTATAATGTATGAATGAAGTGCTTTGAAACTTTAATGTCTTTCCTA
ATTATTTTTTATGCTATGCTACTAAAATTGATCTAATCAAATTTAAACATTTTAAGAGAA
AGTTAGTTTTTATAATTCTGGAAAAACTAAAATAAATTCTGCAATGAATGAAACAATTAT
TGTGTAATAAAATAAAATAAATCTTTAATTGAAATTTTGAAAAAAAAATAATTT
>g8130.t2 Gene=g8130 Length=412
MSEVYKMGVSYSKGSPSLTLGGSSQSKLTWKTRGGYGRKHDVLMEIHLNKVRFSHETYPT
TTEQASRQVLLITELEIRDKLAISNINKFLYHPTVGFRTRQGNNHMVVVKALHIRPERQL
KTQECCLRISLLPIRLNIDQDSLLFMINFFNELSGGSDLNESKTAQTAVVAKVHQPPVMM
VELPEAAQELQARKMVSENLSLLLNDENKNTKDTSDTTSETTQSDSAPIYFRQIIFSPDV
PIRLDYQGKRVELSHGPLAGLLMGLGQLQCSEIRLKKISYRHGILGVDRLVNFLIKEWLE
DIKKRQLPNILGGVGPMYSLVQLFQGIFDLFYLPFEQYQKDGRIVRGIQRGAQSFSARTA
LAALEITSRIIYLLQITAESAYDLLSPGPSVRRRVNRKGKRKRIHPPQVRYS
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g8130.t2 | PANTHER | PTHR13190 | AUTOPHAGY-RELATED 2, ISOFORM A | 22 | 407 | 0 |
| 1 | g8130.t2 | Pfam | PF16909 | Vacuolar-sorting-associated 13 protein C-terminal | 253 | 371 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006914 | autophagy | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
