General information for g8131.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g8131 is located on chr_2: 28715059..28719702 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8131 | g8131.t4 | TSS | g8131.t4 | 28711839 | 28711839 |
| chr_2 | g8131 | g8131.t4 | isoform | g8131.t4 | 28711852 | 28714392 |
| chr_2 | g8131 | g8131.t4 | exon | g8131.t4.exon1 | 28711852 | 28711906 |
| chr_2 | g8131 | g8131.t4 | exon | g8131.t4.exon2 | 28712597 | 28713486 |
| chr_2 | g8131 | g8131.t4 | cds | g8131.t4.CDS1 | 28712641 | 28713486 |
| chr_2 | g8131 | g8131.t4 | exon | g8131.t4.exon3 | 28713551 | 28713684 |
| chr_2 | g8131 | g8131.t4 | cds | g8131.t4.CDS2 | 28713551 | 28713684 |
| chr_2 | g8131 | g8131.t4 | exon | g8131.t4.exon4 | 28713744 | 28713856 |
| chr_2 | g8131 | g8131.t4 | cds | g8131.t4.CDS3 | 28713744 | 28713856 |
| chr_2 | g8131 | g8131.t4 | exon | g8131.t4.exon5 | 28714276 | 28714392 |
| chr_2 | g8131 | g8131.t4 | cds | g8131.t4.CDS4 | 28714276 | 28714391 |
| chr_2 | g8131 | g8131.t4 | TTS | g8131.t4 | 28714799 | 28714799 |
Sequences
>g8131.t4 Gene=g8131 Length=1309
GTGCTCAGTTGATCAACACCTCGAGTTGATACTCCGTACGTTGTTTATTTATCGGTTAAA
ACTCGCTTACGCAGTTGGGTGAGCGATTTTTCTAATGAAATGCGCAAGAAATCAAATGTA
GTTCAAAAATGGGTTGATTCTATAAATGTCATAGATGAGAATATTAATTGTGATAGTAAC
GAGCTTAATATTAATGAATCAGAGCCATCGACAAGTGAATTTGAAATTACTTCCACGACA
GGTAGTGTAAAGGAAAAATTATCGGAAATATGCAATAAACTCAATGTAAATGAGAAATTG
AAGGGCAAGAAAATCGATTTAAAAAATCTCATTTCTAAAACAACGCATAAAATTAAACGG
CAATCGTCGAAAGACACATTAGATATGGAGCAGCAACAGCAGCAACAACAACAAATAGAG
GTAGAAGTTAGTGATAATTTAATTGACAAAGTAGAGCAATGTGATGACGTTAAAGTAAAA
AGTGAATCCATAACAAATATTAGTAATGAAAGTGAAAATAAAGATAATGCTGATGAAGAA
GAATTAGGAAAATCACAAAACGAGATTAAAACAGACACACTCAAAGTTCAGAGGTGTCAT
ATAAGTGTGTTAGGAAGAAGCTCAAGTGAAAATCCAAATCCACCATCACGCAATCGTCGA
CTTACAGACATTGGTCGCAGTTTCAGTGTAGCTCACGATCCAGAATTGCCAATTGATTCG
TCTGAGAATTTAATTTATGATGCAGACGAAGATGTTTCAATAGCGATTCCATCATTTGAT
ATTAGTCCAAATGTCTTGAACAATACAACAAATAGTAGTAATCAATTAGATAAAGAAACC
TTGAGACCATCATTGAGACCATTGAGGGAACATACTGTGTCAGAAGGTCATTACAGTCCA
CATGTATTACCAAAGAATCCTCTACTTCGTGATAGTTCTTTCCAATCTGATTCAAGTCAT
TGTTCATCAGTTGAAAGTCTATTAGAAGCAAGAAAACCAGATGCAGAAGCAATTTTAGTA
AATTTAGGCTTTGGACCTGCACAAGGTTCTGATGATCTTCTCTCAAAAATTCCCAAAAGA
TTTTTAAAACCATCACAAGTACGTGGGGTTGATACAGATACATTTCTTAAAAATCAGCAG
CTATCAATGAATATTCATGAAAATTCAGTACTGGGCTATCGCGGTCTATTAGGTAATCCT
CACACACCACCATCAGATATTGTAAGAGCCATCATGAATAGATTCTCACAAAATGAAATG
CAACGCATGGCATCTATGGAAAATATTAGCACTCAACGAAGTTTCAAAG
>g8131.t4 Gene=g8131 Length=403
MRKKSNVVQKWVDSINVIDENINCDSNELNINESEPSTSEFEITSTTGSVKEKLSEICNK
LNVNEKLKGKKIDLKNLISKTTHKIKRQSSKDTLDMEQQQQQQQQIEVEVSDNLIDKVEQ
CDDVKVKSESITNISNESENKDNADEEELGKSQNEIKTDTLKVQRCHISVLGRSSSENPN
PPSRNRRLTDIGRSFSVAHDPELPIDSSENLIYDADEDVSIAIPSFDISPNVLNNTTNSS
NQLDKETLRPSLRPLREHTVSEGHYSPHVLPKNPLLRDSSFQSDSSHCSSVESLLEARKP
DAEAILVNLGFGPAQGSDDLLSKIPKRFLKPSQVRGVDTDTFLKNQQLSMNIHENSVLGY
RGLLGNPHTPPSDIVRAIMNRFSQNEMQRMASMENISTQRSFK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g8131.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 129 | 157 | - |
| 5 | g8131.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 170 | 189 | - |
| 2 | g8131.t4 | PANTHER | PTHR17469 | SPERM SPECIFIC ANTIGEN 2-RELATED | 49 | 376 | 3.6E-27 |
| 3 | g8131.t4 | PANTHER | PTHR17469:SF15 | AGAP005635-PA | 49 | 376 | 3.6E-27 |
| 1 | g8131.t4 | Pfam | PF14722 | Ki-ras-induced actin-interacting protein-IP3R-interacting domain | 280 | 356 | 9.8E-14 |
| 4 | g8131.t4 | SMART | SM01257 | KRAP_IP3R_bind_2 | 274 | 400 | 2.5E-46 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005102 | signaling receptor binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
