Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g8207 g8207.t2 isoform g8207.t2 29061197 29061704
chr_2 g8207 g8207.t2 exon g8207.t2.exon1 29061197 29061704
chr_2 g8207 g8207.t2 cds g8207.t2.CDS1 29061385 29061681
chr_2 g8207 g8207.t2 TSS g8207.t2 29061970 29061970
chr_2 g8207 g8207.t2 TTS g8207.t2 NA NA

Sequences

>g8207.t2 Gene=g8207 Length=508
CTTGGACAATTTTGTACTTATTAATGGGCTACTCTTCCTATCGTATTTGGCGTATTGGTA
ATGGATGTAAAGGAGAAGCAAAAATTCCTTTATTGATCTACGTTTTTCAATTAATTTTAA
ATTGGTTGTGGACACCAATATTTTTTGCACAAGCACTTGGATGGTCATTTGTCGAAATGA
TAGTTTTGGCCATTGCAGTAGTTGCTACCACAGCTTTATTTTTTAAAATTGATAAGGTAG
CTGGTATTATACTCATTCCTTATATTGCTTGGATATCTTTTGCTGCAACTTTAAATTATT
CAATTTGGTACTTAAATTAAGAAATTATTTTAATGGTAAAATTCGGCTCTTTATATTAAC
TGTAGAAATCTTTATATTTTATAAAATTCTTTAGGAAAAAAACAGAATTATCAGAACATG
TACTAATAACACAAATTTAAAGTTAATACATGCATGTCATCATGTCTAAAATGATGAAAT
TACTGTAATTTCTTAAATTAAAGAGGAA

>g8207.t2 Gene=g8207 Length=98
MGYSSYRIWRIGNGCKGEAKIPLLIYVFQLILNWLWTPIFFAQALGWSFVEMIVLAIAVV
ATTALFFKIDKVAGIILIPYIAWISFAATLNYSIWYLN

Protein features from InterProScan

Transcript Database ID Name Start End E.value
14 g8207.t2 CDD cd15904 TSPO_MBR 1 95 1.18715E-27
6 g8207.t2 Gene3D G3DSA:1.20.1260.100 - 1 98 3.1E-33
2 g8207.t2 PANTHER PTHR10057 PERIPHERAL-TYPE BENZODIAZEPINE RECEPTOR 1 98 2.3E-26
1 g8207.t2 Pfam PF03073 TspO/MBR family 1 95 4.8E-26
7 g8207.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1 20 -
13 g8207.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 21 41 -
9 g8207.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 42 46 -
12 g8207.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 47 67 -
8 g8207.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 68 73 -
11 g8207.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 74 95 -
10 g8207.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 96 98 -
5 g8207.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 21 40 -
4 g8207.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 45 67 -
3 g8207.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 74 96 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0016021 integral component of membrane CC

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values