General information for g8216.t11
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative V-type proton ATPase catalytic subunit A.
Parent gene
- The parent gene g8216 is located on chr_2: 29095694..29099327 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8216 | g8216.t11 | isoform | g8216.t11 | 29095694 | 29096560 |
| chr_2 | g8216 | g8216.t11 | exon | g8216.t11.exon1 | 29095694 | 29096560 |
| chr_2 | g8216 | g8216.t11 | cds | g8216.t11.CDS1 | 29095886 | 29096122 |
| chr_2 | g8216 | g8216.t11 | TTS | g8216.t11 | 29096588 | 29096588 |
| chr_2 | g8216 | g8216.t11 | TSS | g8216.t11 | NA | NA |
Sequences
>g8216.t11 Gene=g8216 Length=867
CGTACAAAAGTGAAGGAAATTCTTCAAGAAGAAGAAGACTTGTCAGAAATTGTGCAACTC
GTTGGTAAAGCATCATTGGCTGAAACTGATAAGATCACATTAGAAGTTGCTAAGCTTCTT
AAGGATGACTTTTTACAACAAAATTCTTATTCATCATATGATCGTTTCTGTCCATTCTAT
AAAACTGTCGGCATGTTAAGAAATTTTATTGCATTCTACGATATGGCTCGTCACGCTGTT
GAATCAACAGCACAATCAGAAAATAAAATTACATGGAACATCATTCGTGATTCAATGGGC
AACATGCTTTATCAATTATCATCTATGAAATTTAAAGATCCAGTCAAAGACGGTGAAGCA
AAAATCAAAGCTGATTTCGATCAATTGCATGAAGAATTACAACAAGCTTTCCGCAATCTA
GAGGATTAAAAAATTAATTCGATCTATAAAAATGTATCTATTGTAACGTTGTTTTTGTCT
TTGCAACTTTAAATTCGGAAAAAAAATTGTTTATAAATTGCTATCTTGCATATTATGCAC
ACACCAAATTAATTATTATATGTACTATGTGTAATATCTTAACTTAAAGTAAAAATTATT
ATTTTATTTCATCATTCCGAGACGATATATGCTGTTGAAATTTTTGTGCAATGTGCAATG
AAATCTTGAATTAACATTTACAATGAAGGAAAAATTGAAAACAAATTCATCTATTCATTA
TTAGTATCAATTTTTCCCAGTATTAAAAAGATAATTATCTTCTGATTCAAAAAAAAAATA
ATATAGAAGAAAATGAAATATATTATATACTACATGTAGTTAAAATATTTGATTTAGTTT
ATGATTAGAATAAATAAAAAATGTACT
>g8216.t11 Gene=g8216 Length=78
MLRNFIAFYDMARHAVESTAQSENKITWNIIRDSMGNMLYQLSSMKFKDPVKDGEAKIKA
DFDQLHEELQQAFRNLED
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 3 | g8216.t11 | Coils | Coil | Coil | 59 | 78 | - |
| 2 | g8216.t11 | Gene3D | G3DSA:1.10.1140.10 | - | 1 | 77 | 2.1E-8 |
| 1 | g8216.t11 | PANTHER | PTHR43607 | V-TYPE PROTON ATPASE CATALYTIC SUBUNIT A | 1 | 77 | 1.4E-13 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0046034 | ATP metabolic process | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
