General information for g8216.t8
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as V-type proton ATPase catalytic subunit A.
Parent gene
- The parent gene g8216 is located on chr_2: 29095694..29099327 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8216 | g8216.t8 | TSS | g8216.t8 | 29093634 | 29093634 |
| chr_2 | g8216 | g8216.t8 | isoform | g8216.t8 | 29094059 | 29094939 |
| chr_2 | g8216 | g8216.t8 | exon | g8216.t8.exon1 | 29094059 | 29094409 |
| chr_2 | g8216 | g8216.t8 | cds | g8216.t8.CDS1 | 29094232 | 29094409 |
| chr_2 | g8216 | g8216.t8 | exon | g8216.t8.exon2 | 29094472 | 29094939 |
| chr_2 | g8216 | g8216.t8 | cds | g8216.t8.CDS2 | 29094472 | 29094938 |
| chr_2 | g8216 | g8216.t8 | TTS | g8216.t8 | NA | NA |
Sequences
>g8216.t8 Gene=g8216 Length=819
ATGTCTAATTTAAAGAAGATAGCAAATGAGGACCGTGAGTCAAAATTCGGCTATGTATTT
GCCGTTTCAGGACCTGGTAAGTCTCAGAACAAGAAATTGTTATAGAGAGAAGAAAATCAA
AATACTATATATATATATTATAATATACTCTTATAGTCGTCACTGCTGAACGAATGGCTG
GATCAGCTATGTACGAGTTGGTGCGTGTAGGCTATTATGAATTGGTTGGTGAAATTATTC
GTTTAGAAGGTGATATGGCAACAATTCAAGTCTATGAAGAAACATCAGGTGTAACTGTTG
GTGATCCTGTCTTGAGAACTGGCAAACCTTTATCAGTCGAATTGGGTCCAGGTATTATGG
GTAGTATTTTTGACGGTATTCAACGTCCATTAAAAGACATTAATGAATTGACACAATCAA
TTTATATCCCAAAGGGAATTAATATTCCTTCACTTTCTCGTACTCAATCATGGGATTTTA
ATCCATTAAATGTAAAAGTCGGATCGCACATAACTGGAGGTGATTTGTATGGTGTAGTTC
ATGAAAATACTTTAGTCAAACATAAATTGATTGTACCACCGAGAGCGAAAGGAACAGTTC
GTTATATTGCACCACCAGGCAATTATACAGTGGATGATATCATTCTTGAGACAGAATTTG
ATGGTGAAATCAATAAATATTCCATGTTGCAAGTGTGGCCTGTTCGTCAGCCACGTCCAG
TCACTGAAAAATTGCCAGCAAATCATCCCTTGCTGACTGGTCAGCGTGTCTTGGATTCAT
TGTTTCCATGTGTTCAAGGAGGAACAACTGCTATACCTG
>g8216.t8 Gene=g8216 Length=215
MAGSAMYELVRVGYYELVGEIIRLEGDMATIQVYEETSGVTVGDPVLRTGKPLSVELGPG
IMGSIFDGIQRPLKDINELTQSIYIPKGINIPSLSRTQSWDFNPLNVKVGSHITGGDLYG
VVHENTLVKHKLIVPPRAKGTVRYIAPPGNYTVDDIILETEFDGEINKYSMLQVWPVRQP
RPVTEKLPANHPLLTGQRVLDSLFPCVQGGTTAIP
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 9 | g8216.t8 | Gene3D | G3DSA:2.30.30.650 | - | 4 | 53 | 0e+00 |
| 8 | g8216.t8 | Gene3D | G3DSA:2.40.50.100 | - | 98 | 157 | 0e+00 |
| 7 | g8216.t8 | Gene3D | G3DSA:3.40.50.300 | - | 158 | 215 | 0e+00 |
| 3 | g8216.t8 | PANTHER | PTHR43607:SF1 | V-TYPE PROTON ATPASE CATALYTIC SUBUNIT A | 1 | 215 | 0e+00 |
| 4 | g8216.t8 | PANTHER | PTHR43607 | V-TYPE PROTON ATPASE CATALYTIC SUBUNIT A | 1 | 215 | 0e+00 |
| 2 | g8216.t8 | Pfam | PF02874 | ATP synthase alpha/beta family, beta-barrel domain | 5 | 50 | 0e+00 |
| 1 | g8216.t8 | Pfam | PF16886 | ATPsynthase alpha/beta subunit N-term extension | 66 | 187 | 0e+00 |
| 5 | g8216.t8 | SUPERFAMILY | SSF50615 | N-terminal domain of alpha and beta subunits of F1 ATP synthase | 2 | 53 | 0e+00 |
| 6 | g8216.t8 | SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 163 | 215 | 3e-07 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0046034 | ATP metabolic process | BP |
| GO:1902600 | proton transmembrane transport | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed