Chromosome | Gene | Transcript | Category | ID | Start | End |
---|---|---|---|---|---|---|
chr_3 | g823 | g823.t12 | isoform | g823.t12 | 6266352 | 6269939 |
chr_3 | g823 | g823.t12 | exon | g823.t12.exon1 | 6266352 | 6266366 |
chr_3 | g823 | g823.t12 | cds | g823.t12.CDS1 | 6266353 | 6266366 |
chr_3 | g823 | g823.t12 | exon | g823.t12.exon2 | 6266441 | 6266801 |
chr_3 | g823 | g823.t12 | cds | g823.t12.CDS2 | 6266441 | 6266801 |
chr_3 | g823 | g823.t12 | exon | g823.t12.exon3 | 6268390 | 6268467 |
chr_3 | g823 | g823.t12 | cds | g823.t12.CDS3 | 6268390 | 6268419 |
chr_3 | g823 | g823.t12 | exon | g823.t12.exon4 | 6269929 | 6269939 |
chr_3 | g823 | g823.t12 | TSS | g823.t12 | 6270055 | 6270055 |
chr_3 | g823 | g823.t12 | TTS | g823.t12 | NA | NA |
>g823.t12 Gene=g823 Length=465
ACTTGTTTATTATTAAAAATTTATCGTCTTAAAAATAATCAACTGATAAAGAATTAATCA
TGTCGCTCTTCAGAATCGCATCAGCGGAGGTACGCAATGTTATCAAGCGCTCATATAACA
CCACAAATGTCGCACCCACTGTCAAAATGTTCATTGATGGAAAATTTGTTGATTCACAAG
CCAAAGAATGGATTGATTTACATGATCCAGCAACAAATGAGCTTGTAACACGCGTTCCAA
AGTGCACTCTTGATGAAATGAATGCTGCTGTTGAATCATCGAAACGCGCTTTTAAGACAT
GGAGTCAAACATCAATTCTTACACGTCAGCAAGTCATGCTCAAATTGCAGCATATTATTC
GCGCCAATATGTCTGAATTAGCTAAGAATATTACAAAAGAACAGGGAAAAACACTTGTCG
ATGCTGAAGGCGATGTTTTAAGAGGATTGCAGGTTGTTGAGCACA
>g823.t12 Gene=g823 Length=135
MSLFRIASAEVRNVIKRSYNTTNVAPTVKMFIDGKFVDSQAKEWIDLHDPATNELVTRVP
KCTLDEMNAAVESSKRAFKTWSQTSILTRQQVMLKLQHIIRANMSELAKNITKEQGKTLV
DAEGDVLRGLQVVEH
Transcript | Database | ID | Name | Start | End | E.value | |
---|---|---|---|---|---|---|---|
5 | g823.t12 | Gene3D | G3DSA:3.40.605.10 | Aldehyde Dehydrogenase; Chain A | 9 | 135 | 0 |
2 | g823.t12 | PANTHER | PTHR43866:SF3 | METHYLMALONATE-SEMIALDEHYDE DEHYDROGENASE [ACYLATING], MITOCHONDRIAL | 8 | 135 | 0 |
3 | g823.t12 | PANTHER | PTHR43866 | MALONATE-SEMIALDEHYDE DEHYDROGENASE | 8 | 135 | 0 |
1 | g823.t12 | Pfam | PF00171 | Aldehyde dehydrogenase family | 36 | 134 | 0 |
4 | g823.t12 | SUPERFAMILY | SSF53720 | ALDH-like | 12 | 134 | 0 |
IUPRED3 score over 0.5 is predictive of a disordered region.
GOID | TERM | ONTOLOGY |
---|---|---|
GO:0004491 | methylmalonate-semialdehyde dehydrogenase (acylating) activity | MF |
GO:0055114 | NA | NA |
GO:0016491 | oxidoreductase activity | MF |
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
TPM values are indicated as average +/- STDEV.
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.