General information for g8274.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g8274 is located on chr_2: 29435793..29439356 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8274 | g8274.t2 | isoform | g8274.t2 | 29435793 | 29439356 |
| chr_2 | g8274 | g8274.t2 | exon | g8274.t2.exon1 | 29435793 | 29436642 |
| chr_2 | g8274 | g8274.t2 | cds | g8274.t2.CDS1 | 29435793 | 29436642 |
| chr_2 | g8274 | g8274.t2 | exon | g8274.t2.exon2 | 29437064 | 29437232 |
| chr_2 | g8274 | g8274.t2 | cds | g8274.t2.CDS2 | 29437064 | 29437232 |
| chr_2 | g8274 | g8274.t2 | exon | g8274.t2.exon3 | 29437329 | 29437513 |
| chr_2 | g8274 | g8274.t2 | cds | g8274.t2.CDS3 | 29437329 | 29437513 |
| chr_2 | g8274 | g8274.t2 | exon | g8274.t2.exon4 | 29437586 | 29437677 |
| chr_2 | g8274 | g8274.t2 | cds | g8274.t2.CDS4 | 29437586 | 29437677 |
| chr_2 | g8274 | g8274.t2 | exon | g8274.t2.exon5 | 29439318 | 29439356 |
| chr_2 | g8274 | g8274.t2 | cds | g8274.t2.CDS5 | 29439318 | 29439356 |
| chr_2 | g8274 | g8274.t2 | TTS | g8274.t2 | 29439863 | 29439863 |
| chr_2 | g8274 | g8274.t2 | TSS | g8274.t2 | NA | NA |
Sequences
>g8274.t2 Gene=g8274 Length=1335
ATGCAATTGATTCGTGCAATCAATAAAGCTAACAAGAGCAATAATAATACTAATATAAAT
AGTAATCCAAACAATAACAATAATATTAATATTCAGACGTCGTCCACAACAAATAACGTC
ACTAATAACAATAATAATAACAGTAGTAATAAGGTTGTAATCGTTGCACCCTCGAATGCA
GCTGAGAAACATGCGTCACAGCAACAGCAAGTCAACCAAAGTGTTAACGTCGATTCGACG
TCAATAACTCCTCCTCTTAATTCTGTTAGTCCAAGCGCGTCACTACCACCATTAAAAAAG
AGAACGTCAATTGTCAAACAATCAGTTCCACCGCCAGTACCACCACGGTCACCGCGATCA
AAAAGTAAATGCAAATCCTTTGGTCATTCATTTTATTATAATTTTGGCAATAGACAATTT
AAGCAAAATTCTTTGAATGTTGATAACTTAAAGTCATTAACGAACATGGAAGCAGAAAGC
GGAACACAAAAAGTTAAAAAATGGCTTGAGTCAGTTGAAGTGCCAGAATGTGACAATTTG
AACGAGTTTTCAATTCATGAAGAATTTGAATTTAAAAGCGTCAAAAAACTTGTTGAATCA
TTTGTATCAAAAGATAGTATAGATTATAAAAAACCTAATATGCGTAGTAGTCGAAAAGTA
TCTGATTGTAGTATTGTGCAAATACATATTGCAAATTATAATTCTCTTAATCGGAATACA
TTTAATAAAATTTCAAATCAATCAACAAATGAAACAGATTCAGGAATTGAAAGTTCACTT
AAAACTTCCGAAAAACTGCTTCCATTAAAATCTTCAACCTATTTTTTTCGTCATCAATTT
AATCGTGACGGCTCAGCCCCATCATGCTCATCAACTCCGCCACCTGCATTTGACGAAATT
AGTGAGCACGGAGTATATAACAATCAAACGAAAAATTTAAGCAATGATTATAGAAGTTCT
AGTGATAAGAGACTAAATTCGCCTCGCAGTACGAGCAGTTATCGTGAAGATTCAGTTAGT
ATATCAGATATTCGATTAGAAACACATTTAACAAAGGAGTCAACATCATCAAACAATAGC
GCGTACGGTTCGCGCGGTGCACTAGCATGGACCCCACCAACTTCTATGGAAGGTTCAACA
CCAACATGGACTGAAGGTACACCCAGTTTCACCGAATCGAGCTCTAGTGAAAACGGTGAT
ATTGAATTTTCTGGTTCATCATCTCCTCTTCATTCGTCTTCAGATAAACACAAGCCAACT
GTTGAGAAAGCACTTAACTCCCTAACTTCAGAAATGGAAAATTTGCGGTATCAAGTTGAT
TATGACTATAATTAA
>g8274.t2 Gene=g8274 Length=444
MQLIRAINKANKSNNNTNINSNPNNNNNINIQTSSTTNNVTNNNNNNSSNKVVIVAPSNA
AEKHASQQQQVNQSVNVDSTSITPPLNSVSPSASLPPLKKRTSIVKQSVPPPVPPRSPRS
KSKCKSFGHSFYYNFGNRQFKQNSLNVDNLKSLTNMEAESGTQKVKKWLESVEVPECDNL
NEFSIHEEFEFKSVKKLVESFVSKDSIDYKKPNMRSSRKVSDCSIVQIHIANYNSLNRNT
FNKISNQSTNETDSGIESSLKTSEKLLPLKSSTYFFRHQFNRDGSAPSCSSTPPPAFDEI
SEHGVYNNQTKNLSNDYRSSSDKRLNSPRSTSSYREDSVSISDIRLETHLTKESTSSNNS
AYGSRGALAWTPPTSMEGSTPTWTEGTPSFTESSSSENGDIEFSGSSSPLHSSSDKHKPT
VEKALNSLTSEMENLRYQVDYDYN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 3 | g8274.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 82 | 123 | - |
| 4 | g8274.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 82 | 97 | - |
| 5 | g8274.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 302 | 420 | - |
| 2 | g8274.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 303 | 339 | - |
| 1 | g8274.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 351 | 365 | - |
| 6 | g8274.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 373 | 414 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
