Gene loci information

Transcript annotation

  • This transcript has been annotated as Dynactin subunit 2.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g8359 g8359.t6 TSS g8359.t6 30026556 30026556
chr_2 g8359 g8359.t6 isoform g8359.t6 30026640 30027967
chr_2 g8359 g8359.t6 exon g8359.t6.exon1 30026640 30026675
chr_2 g8359 g8359.t6 exon g8359.t6.exon2 30026738 30026941
chr_2 g8359 g8359.t6 cds g8359.t6.CDS1 30026937 30026941
chr_2 g8359 g8359.t6 exon g8359.t6.exon3 30027002 30027726
chr_2 g8359 g8359.t6 cds g8359.t6.CDS2 30027002 30027726
chr_2 g8359 g8359.t6 exon g8359.t6.exon4 30027783 30027967
chr_2 g8359 g8359.t6 cds g8359.t6.CDS3 30027783 30027967
chr_2 g8359 g8359.t6 TTS g8359.t6 30028080 30028080

Sequences

>g8359.t6 Gene=g8359 Length=1150
ATGTTGGACCCAAAGTTTAAAAATCTTCCATTCTTGGCACAAGATGAGAAAGATGTATAT
GAAACTGATGATCAATTATCCAGTGAAACTGATTATTACGAAGAGGAAACTGAGAATGAA
TCAATTGATCGCTTAAAATTAAATGTGAATGATGCTTTTTCAAAATTCAAGGGAAAATAT
TTAATTGGAAATGTTGATTTCTCTGATAGCATAAGCAAGAGAAATTTTGGCTATAATGCT
CTCTGGAATCTATGAGATTGTTGGTGAAGGTGAGAAAGAAACACCCGTTCAAAAACTTCA
ACGATTGCAATTTGAGATGAATGAATTGATGGAGGAAGTGACATCTCTTGAGAATGATAA
GAGCATTTCAAAAGAAGAGCATGAAGCATACTTTAAAATGTCGAAAGTTGTGCAAAATTC
TAAAAAGATTCTTGATAGCTTACACATTGAAGAAGCTTTAGGTGGCCAAAACGGTGGTCA
ACCAGCTGAGAAAGCTGTTAAGAATCTAATTACTCAAGTTGATAGCTATAAAAAAGGTGC
ACCAGAGATGTCTGCTGAATTAATTAAATTGAAAACGCAGAGTGATATCACTTTTTCCAC
TCGCATTGCTGAGATGGAACATAAGTTACACAAAATTGAACAAACTGTTGGTATGAAACC
AGACAAGTTGTCTCGAATCAATAGTTCTTTAGATACTAAGAATCTCCTTGAAGCTGTTCA
ACAATTATCAACGAGATCCGCTTTGATTCAACCGAGTCAATTGGATATTATCGAACAGAG
ACTTACAATTTTATCATCGAAAATGGACCAATTTAAAGATAAAGCAATTGCTGCCGGAAC
TGACCGTGAACGTGAACAGAAAATTACTGAATTATATGATTTGGCAAAATCAACTGAACC
AATAACGAAAATACTTCCTGATATGCTCGAACGAATGAAAACTTTGGAAGCACTCCATTC
ATATGCTGCAAACTTTAGTAAATTATTTGCTGAGTTAGAAGCAACACAGAATATTATTTT
GAAGGGAATCGCTGGTAACAAGGAACTTTTGCAAGGTGTTCAAAAAGCCTTTGTTGAAAA
TGATGAAAATGCTAAGAAAGAACTAAAAAAATTAGAAGAGCGTGTCATCGCTATAACAAA
TAAGAAGTAA

>g8359.t6 Gene=g8359 Length=304
MLSGIYEIVGEGEKETPVQKLQRLQFEMNELMEEVTSLENDKSISKEEHEAYFKMSKVVQ
NSKKILDSLHIEEALGGQNGGQPAEKAVKNLITQVDSYKKGAPEMSAELIKLKTQSDITF
STRIAEMEHKLHKIEQTVGMKPDKLSRINSSLDTKNLLEAVQQLSTRSALIQPSQLDIIE
QRLTILSSKMDQFKDKAIAAGTDREREQKITELYDLAKSTEPITKILPDMLERMKTLEAL
HSYAANFSKLFAELEATQNIILKGIAGNKELLQGVQKAFVENDENAKKELKKLEERVIAI
TNKK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
4 g8359.t6 Coils Coil Coil 21 48 -
3 g8359.t6 Coils Coil Coil 176 196 -
5 g8359.t6 Coils Coil Coil 276 303 -
2 g8359.t6 PANTHER PTHR15346 DYNACTIN SUBUNIT 5 301 3.1E-49
1 g8359.t6 Pfam PF04912 Dynamitin 5 298 5.4E-67

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005869 dynactin complex CC
GO:0007017 microtubule-based process BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed