Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative MAP kinase-interacting serine/threonine-protein kinase 1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g836 g836.t17 TSS g836.t17 6385279 6385279
chr_3 g836 g836.t17 isoform g836.t17 6385362 6388189
chr_3 g836 g836.t17 exon g836.t17.exon1 6385362 6385457
chr_3 g836 g836.t17 exon g836.t17.exon2 6385831 6386342
chr_3 g836 g836.t17 exon g836.t17.exon3 6387724 6387949
chr_3 g836 g836.t17 cds g836.t17.CDS1 6387742 6387949
chr_3 g836 g836.t17 exon g836.t17.exon4 6388014 6388189
chr_3 g836 g836.t17 cds g836.t17.CDS2 6388014 6388189
chr_3 g836 g836.t17 TTS g836.t17 NA NA

Sequences

>g836.t17 Gene=g836 Length=1010
TAAATTTTAATAAAGGAGCAGAAGTGATTGTGCGAAAGTCACAGCCAATTCGACGAAGAG
TACGACAACGAAGGCCATTGATAACAAATTTCTCTGAACTGTATAAATTGACGGGCGAAA
TATTGGGAGAAGGTGCCTATGCCTCAGTACAAACCTGTATAAATATATTCACCGATGTAG
AGTGTGCCGTTAAAATTATTGATAAGATACCAGGCCATGCACGAGCTCGAGTATTTCGTG
AAGTAGAGACGTTCCATCATTGTCAGGGACATCCGAATATTCTCCAATTAATTGAGTTCT
TTGAGGATAAGGAGAAATTCTATTTAGTATTTGAAAAGATCAATGGTGGTCCGCTATTGA
CGCGTATACAAGAGAACATTTGCTTCTCAGAGCATGATGCAGCACAAATAATTAAGGAAA
TAGCCTCAGGATTGAATTTTTTGCATAAGAAGGGCATAGCTCATCGTGATTTGAAACCTG
AAAATATTTTATGCGTTAATCCGGACACAATTTGTCCCATTAAAATATGTGATTTTGATC
TCGGCTCGGGAATTAATTTTACGACTGACGTTTCTGAATCAGTGGCCACTCCGCAACTTC
TGACACCGGTTGGTTCCGCTGAATTCATGGCTCCCGAAGTTGTCGACTTGTTTGTTGGCG
AGCGCGAGAGCAGCTACGATAAAAGATGTGATTTGTGGTCAATGGGTGTCATTGCATATA
TCTTACTGTCTGGCTATCCGCCATTCTCCGGCAATTGTGGTCAAGAATGTGGCTGGAATC
GCGGTGAAAATTGTCAGAAATGTCAAGAGTTACTTTTTGAGTCAATTCGTGAAGGACGTT
TTAGTTTTCCTGAAACCGAATGGCGTGACGTCAGCGAGGAGGCAAAAGATTTGATTCGTA
ATTTATTGGTAAAGGAAGCATCAAAGCGACTATCAGCTGAGGCTGTCTTAATTCATCCCT
GGATCAAAGTCGCTGATGAAGATTGTGACAACGAAAAACGCTATCGTGCG

>g836.t17 Gene=g836 Length=128
MAPEVVDLFVGERESSYDKRCDLWSMGVIAYILLSGYPPFSGNCGQECGWNRGENCQKCQ
ELLFESIREGRFSFPETEWRDVSEEAKDLIRNLLVKEASKRLSAEAVLIHPWIKVADEDC
DNEKRYRA

Protein features from InterProScan

Transcript Database ID Name Start End E.value
5 g836.t17 Gene3D G3DSA:1.10.510.10 Transferase(Phosphotransferase) domain 1 1 119 0.000
2 g836.t17 PANTHER PTHR24349 SERINE/THREONINE-PROTEIN KINASE 1 114 0.000
3 g836.t17 PANTHER PTHR24349:SF114 MAP KINASE-INTERACTING SERINE/THREONINE-PROTEIN KINASE 1 1 114 0.000
1 g836.t17 Pfam PF00069 Protein kinase domain 1 113 0.000
6 g836.t17 ProSiteProfiles PS50011 Protein kinase domain profile. 1 113 18.026
4 g836.t17 SUPERFAMILY SSF56112 Protein kinase-like (PK-like) 1 116 0.000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005524 ATP binding MF
GO:0004672 protein kinase activity MF
GO:0006468 protein phosphorylation BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed