General information for g836.t18
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative MAP kinase-interacting serine/threonine-protein kinase 1.
Parent gene
- The parent gene g836 is located on chr_3: 6388313..6392170 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g836 | g836.t18 | TSS | g836.t18 | 6385279 | 6385279 |
| chr_3 | g836 | g836.t18 | isoform | g836.t18 | 6385362 | 6388189 |
| chr_3 | g836 | g836.t18 | exon | g836.t18.exon1 | 6385362 | 6385457 |
| chr_3 | g836 | g836.t18 | exon | g836.t18.exon2 | 6385831 | 6386342 |
| chr_3 | g836 | g836.t18 | exon | g836.t18.exon3 | 6387724 | 6387898 |
| chr_3 | g836 | g836.t18 | cds | g836.t18.CDS1 | 6387742 | 6387898 |
| chr_3 | g836 | g836.t18 | exon | g836.t18.exon4 | 6387977 | 6388189 |
| chr_3 | g836 | g836.t18 | cds | g836.t18.CDS2 | 6387977 | 6387990 |
| chr_3 | g836 | g836.t18 | TTS | g836.t18 | NA | NA |
Sequences
>g836.t18 Gene=g836 Length=996
TAAATTTTAATAAAGGAGCAGAAGTGATTGTGCGAAAGTCACAGCCAATTCGACGAAGAG
TACGACAACGAAGGCCATTGATAACAAATTTCTCTGAACTGTATAAATTGACGGGCGAAA
TATTGGGAGAAGGTGCCTATGCCTCAGTACAAACCTGTATAAATATATTCACCGATGTAG
AGTGTGCCGTTAAAATTATTGATAAGATACCAGGCCATGCACGAGCTCGAGTATTTCGTG
AAGTAGAGACGTTCCATCATTGTCAGGGACATCCGAATATTCTCCAATTAATTGAGTTCT
TTGAGGATAAGGAGAAATTCTATTTAGTATTTGAAAAGATCAATGGTGGTCCGCTATTGA
CGCGTATACAAGAGAACATTTGCTTCTCAGAGCATGATGCAGCACAAATAATTAAGGAAA
TAGCCTCAGGATTGAATTTTTTGCATAAGAAGGGCATAGCTCATCGTGATTTGAAACCTG
AAAATATTTTATGCGTTAATCCGGACACAATTTGTCCCATTAAAATATGTGATTTTGATC
TCGGCTCGGGAATTAATTTTACGACTGACGTTTCTGAATCAGTGGCCACTCCGCAACTTC
TGACACCGGTTGGTTCCGCTGAATTCATGGCTCCCGAAGTTGTCGACTTGTTTGTTGGCG
AGCGCGAGAGCAGCTACGATAAAAGATGTGATTTGTGGTCAATGGGTGTCATTGCATATA
TCTTACTGTCTGGCTATCCGCCATTCTCCGGCAATTGTGGTCAAGAATGTGGCTGGAATC
GCGAAAATTTGAAATGAATTAAATTTCTTTTTATTTATAGGACGTTTTAGTTTTCCTGAA
ACCGAATGGCGTGACGTCAGCGAGGAGGCAAAAGATTTGATTCGTAATTTATTGGTAAAG
GAAGCATCAAAGCGACTATCAGCTGAGGCTGTCTTAATTCATCCCTGGATCAAAGTCGCT
GATGAAGATTGTGACAACGAAAAACGCTATCGTGCG
>g836.t18 Gene=g836 Length=56
MAPEVVDLFVGERESSYDKRCDLWSMGVIAYILLSGYPPFSGNCGQECGWNRENLK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g836.t18 | Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1 | 47 | 0.000 |
| 2 | g836.t18 | PANTHER | PTHR24349 | SERINE/THREONINE-PROTEIN KINASE | 1 | 51 | 0.000 |
| 3 | g836.t18 | PANTHER | PTHR24349:SF114 | MAP KINASE-INTERACTING SERINE/THREONINE-PROTEIN KINASE 1 | 1 | 51 | 0.000 |
| 1 | g836.t18 | Pfam | PF00069 | Protein kinase domain | 1 | 47 | 0.000 |
| 6 | g836.t18 | ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 56 | 12.966 |
| 4 | g836.t18 | SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 1 | 44 | 0.000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005524 | ATP binding | MF |
| GO:0004672 | protein kinase activity | MF |
| GO:0006468 | protein phosphorylation | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
