General information for g836.t27
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g836 is located on chr_3: 6388313..6392170 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g836 | g836.t27 | TSS | g836.t27 | 6387723 | 6387723 |
| chr_3 | g836 | g836.t27 | isoform | g836.t27 | 6388024 | 6389372 |
| chr_3 | g836 | g836.t27 | exon | g836.t27.exon1 | 6388024 | 6388215 |
| chr_3 | g836 | g836.t27 | exon | g836.t27.exon2 | 6388283 | 6389372 |
| chr_3 | g836 | g836.t27 | cds | g836.t27.CDS1 | 6388326 | 6388550 |
| chr_3 | g836 | g836.t27 | TTS | g836.t27 | 6389365 | 6389365 |
Sequences
>g836.t27 Gene=g836 Length=1282
TTTTCCTGAAACCGAATGGCGTGACGTCAGCGAGGAGGCAAAAGATTTGATTCGTAATTT
ATTGGTAAAGGAAGCATCAAAGCGACTATCAGCTGAGGCTGTCTTAATTCATCCCTGGAT
CAAAGTCGCTGATGAAGATTGTGACAACGAAAAACGCTATCGTGCGCTTAAAACTCCAGG
GATCATTCGAAGCAATCAATCTGCTCGTAAATTATCTCAATTCGCTGAGTCGGCAATGGC
TGTGAACCGAGTAATTTTACAACAATTTTCCATGCAACTAAATTATTTGAACAACAAGGA
GCGATCCAACATTTATCAACCATCAGTAAAGACGCAACAGCATCAACAGCATCATCAACA
TCACAGCAGCTCCAATGACTCATTTTTAATGCCAGAGTTGCCACCACCACTAAATACAGT
ACGTCAGCTAAGCAGTAGTGACGATGATGAATTGCAATAAAATGCAGTGAATCATCCTCG
TGTGGTTCCAATCCGATGACACCTTCAGGCAATCATCGGATGAAGACATTCAGACCATTT
TAGACAATGTGCTTTTGACCAACAACAGTGCTGGCATGAGTAACATCATCAACAAATGTG
ATGACGCTGTCAACAGTCCTTTGCAGTCACGTCGTCGTCAAACACGACCACTTTTTATTG
TATGTCCAACACCAAGTGGCTGATAAACCTGTATGGAGAAACTACCAAGTACTTTCTTCT
TCTTCTATTCTTCCTACATAACCATTCATCCATCTTATATCTTATGGAAAATTATTGATA
AAACAGAACTCTTTCTAATCTAATCTGCACCTATCTAATGAATGAATATTATGTAGTTCC
ATCTAATGAACTTACTTTAATAATTTATTCCCAAAACAAAAAGAGAGTTACAAATTTTTA
AATATATACTGCATAGTCTCGAGACCTCAGTGCAAAAGAATTTTAATAATGATAACAATT
GAATGATGAGAAACATCTTAGAATATTTCCATTAGCTTTGATTGAATCACAAAAAAAGTT
CGATAAAACACAAATCATCTTAAAATTATTTTTATTCTCTTCTTAATTTTTTATTAAACT
ATTTCTCCTGAACCAATTCAAATTTTGTAAGCGTAGAAAATGATAAAATTACTTAAAAAA
CATGTTCTCAAAAAATATGAAAGAAAAATCATGAAAATCTTTCAGAAAAAAACACAAAAA
TAATTTTTCTTTTATAAGTTTTTTTATTTTTTTTTGTCAAACATTTGCAATAAAAATCTA
ATTTTTTATATCTGAATGAAAA
>g836.t27 Gene=g836 Length=74
MAVNRVILQQFSMQLNYLNNKERSNIYQPSVKTQQHQQHHQHHSSSNDSFLMPELPPPLN
TVRQLSSSDDDELQ
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value |
|---|---|---|---|---|---|---|
| g836.t27 | MobiDBLite | mobidb-lite | consensus disorder prediction | 28 | 74 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
