General information for g8368.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Methanethiol oxidase.
Parent gene
- The parent gene g8368 is located on chr_2: 30046517..30047745 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8368 | g8368.t1 | TTS | g8368.t1 | 30045412 | 30045412 |
| chr_2 | g8368 | g8368.t1 | isoform | g8368.t1 | 30045539 | 30047402 |
| chr_2 | g8368 | g8368.t1 | exon | g8368.t1.exon1 | 30045539 | 30046233 |
| chr_2 | g8368 | g8368.t1 | cds | g8368.t1.CDS1 | 30045539 | 30046233 |
| chr_2 | g8368 | g8368.t1 | exon | g8368.t1.exon2 | 30046445 | 30046869 |
| chr_2 | g8368 | g8368.t1 | cds | g8368.t1.CDS2 | 30046445 | 30046869 |
| chr_2 | g8368 | g8368.t1 | exon | g8368.t1.exon3 | 30046994 | 30047318 |
| chr_2 | g8368 | g8368.t1 | cds | g8368.t1.CDS3 | 30046994 | 30047318 |
| chr_2 | g8368 | g8368.t1 | exon | g8368.t1.exon4 | 30047390 | 30047402 |
| chr_2 | g8368 | g8368.t1 | cds | g8368.t1.CDS4 | 30047390 | 30047402 |
| chr_2 | g8368 | g8368.t1 | TSS | g8368.t1 | 30047454 | 30047454 |
Sequences
>g8368.t1 Gene=g8368 Length=1458
ATGGCTTGCAAAGAAGGAAATAAATGTGGAAAGGGACCAGGTTATCCCTCGCCAATGTGG
GCATTTAAAAATGGTCCTCGCGAGAAAATATTGTACGTTGCTACAGTTCAGCCTAATTTA
GAAGATGAGAGTGGAGATTATCTTAGTGTTGTTGACGTTGATCCTCAAAGCGAGACTTTT
TGTCAGGTAATTCATCGTGCGTATTCTGGAAATAAAGGCCAAGAATTTCACCACATAGGC
TGGAATACGTGCTCATCATGTCATTTTGTTGATGCCGCATGCACGGATATTCCCAGTAGA
GATAAACTCGTGTTGCCATGTTTGATATCTGATGCAGTTTATGTCTTCGATGTTGGACAC
GATCCAAAGCGTCCAACACTACATAAAATCATCGATGGTGAAGTTCTACGTAATAATGAT
GTTAGTGCGCCGCATACCGCACATTGTCTTCCTTCTGGCAATGTTATGATTTCTACAATG
GGCGATAAGGACGCGAATGCTAAGGGCGATTTTATTTTGTTTGATAAAAACTTTGATTGT
GTGGGAACTTGGACAGTAGGCGAGAAAGCACTTTGCGGCTACGATTATTGGTATCAGCCT
TACTTTAATGTATTGATTGCAAGTGAATGGGGAGCTCCTCGTCTTTTTAGAAGAGGCTTT
GATGCCGACGATTTGAAATCTGAACGTGACTATGGACGACGACTGAATGTTTACGCTTGG
AATGAAAGAAAATTAATCGATACGATTGATCTAGGAGATGAAGGAATCGCCCCACTTGAA
ATTCGTTTCATGCATGATCCCAAAAGATGTGAAGGCTTCGTTGGAGCTTCTCTATGTAGC
AAAGTTTTTCGCTTCTATAAGAAAAACCCTACGGATGAAAAGTTTACTGTAGAAAAAGTT
ATAGATGTGCCAGTAAAAAAAGTTGAAGGATGGATTATGCCCGAAATGAATGGGTTGATG
ACCGATATTCTTCTTTCGTTGGATGATCGCTTCATTTATTTCAGCAATTGGTTTCATGGT
GATGTCAGACAATATGACATTAGTGATCCAGCAAATCCAAAATTGACTGGTCAAATCTTT
CTTGGTGGCATGCTTCTCAATGACTCGAAAGTAAAAGTACTTGAAGATAAAGAGCTCAAA
GAGCAACCTTCGCCAACATTTATCAAAGGAAGAAGGCTCTATGGTGGACCGCAAATGCTG
CAATTGAGTTTAGATGGTAAAAGACTTTATGTAAGCTCATCTTTGTTTTCACCATGGGAT
AAGCAATTTTATCCTGACATGGTAAAGAATGGTGGTACAATTGTACAAATCGATATTGAT
ACAGTCAATGGTGGCATGAAATTGAACGAAGAATTCTTAGTTGATTTTGCTAACGAGCCT
AATGGACCGGCACTTCCTCATGAAATGAGATATCCCGGTGGAGATTGTACTTCTGATATT
TGGCTTGCTGAAGATTAA
>g8368.t1 Gene=g8368 Length=485
MACKEGNKCGKGPGYPSPMWAFKNGPREKILYVATVQPNLEDESGDYLSVVDVDPQSETF
CQVIHRAYSGNKGQEFHHIGWNTCSSCHFVDAACTDIPSRDKLVLPCLISDAVYVFDVGH
DPKRPTLHKIIDGEVLRNNDVSAPHTAHCLPSGNVMISTMGDKDANAKGDFILFDKNFDC
VGTWTVGEKALCGYDYWYQPYFNVLIASEWGAPRLFRRGFDADDLKSERDYGRRLNVYAW
NERKLIDTIDLGDEGIAPLEIRFMHDPKRCEGFVGASLCSKVFRFYKKNPTDEKFTVEKV
IDVPVKKVEGWIMPEMNGLMTDILLSLDDRFIYFSNWFHGDVRQYDISDPANPKLTGQIF
LGGMLLNDSKVKVLEDKELKEQPSPTFIKGRRLYGGPQMLQLSLDGKRLYVSSSLFSPWD
KQFYPDMVKNGGTIVQIDIDTVNGGMKLNEEFLVDFANEPNGPALPHEMRYPGGDCTSDI
WLAED
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g8368.t1 | PANTHER | PTHR23300:SF11 | SELENIUM-BINDING PROTEIN 1 | 8 | 482 | 0 |
| 3 | g8368.t1 | PANTHER | PTHR23300 | METHANETHIOL OXIDASE | 8 | 482 | 0 |
| 1 | g8368.t1 | Pfam | PF05694 | 56kDa selenium binding protein (SBP56) | 11 | 482 | 0 |
| 4 | g8368.t1 | SUPERFAMILY | SSF75011 | 3-carboxy-cis,cis-mucoante lactonizing enzyme | 44 | 414 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0008430 | selenium binding | MF |
KEGG
Orthology
- This transcript has been annotated with K17285 (methanethiol oxidase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
