General information for g8395.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Transcription factor BTF3 homolog 4.
Parent gene
- The parent gene g8395 is located on chr_2: 30149797..30150535 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8395 | g8395.t1 | TTS | g8395.t1 | 30149639 | 30149639 |
| chr_2 | g8395 | g8395.t1 | isoform | g8395.t1 | 30149797 | 30150535 |
| chr_2 | g8395 | g8395.t1 | exon | g8395.t1.exon1 | 30149797 | 30150027 |
| chr_2 | g8395 | g8395.t1 | cds | g8395.t1.CDS1 | 30149797 | 30150027 |
| chr_2 | g8395 | g8395.t1 | exon | g8395.t1.exon2 | 30150111 | 30150334 |
| chr_2 | g8395 | g8395.t1 | cds | g8395.t1.CDS2 | 30150111 | 30150334 |
| chr_2 | g8395 | g8395.t1 | exon | g8395.t1.exon3 | 30150481 | 30150535 |
| chr_2 | g8395 | g8395.t1 | cds | g8395.t1.CDS3 | 30150481 | 30150535 |
| chr_2 | g8395 | g8395.t1 | TSS | g8395.t1 | 30150617 | 30150617 |
Sequences
>g8395.t1 Gene=g8395 Length=510
ATGAATCCTGAAAAGTTGAAGAAACTACAGGCAGAAGTTCGTATTGGTGGGAAAGGGATG
CCAAGACGAAAGAAGAAGGTAGTGCATCAGAGTGCAGCAACAGATGACAAAAAATTGCAA
TCAACATTGAAAAAATTGGCTGTTAACAATATTCCCGGAATTGAAGAAGTTAATATGATG
AAAAATGACGGTAATGTGATTCATTTTAATAATCCAAGAACACAAGCATCTCTACAGTCG
AACATTTTTGCCATAACTGGACATGCTGAAACAAAGAATATTGCTGAAATGCTGCCTGGA
ATTCTCAATCACTTGGGTTCTGATGGTCTTTCACATTTGAGAAAACTTGCTTCTGCCACA
CGTGAACGCTTGCCTGCTGATGATGAAGAGGTCGACATTCCAGATTTAGTTCAAAATTTT
GAAAATGCAATGGGTAGCAGTGAGAATAATGAAGTTAATGTAGATGAAGCAATCGAAACA
AAGCATGTTCCAACTGAAACTGTGGATTAG
>g8395.t1 Gene=g8395 Length=169
MNPEKLKKLQAEVRIGGKGMPRRKKKVVHQSAATDDKKLQSTLKKLAVNNIPGIEEVNMM
KNDGNVIHFNNPRTQASLQSNIFAITGHAETKNIAEMLPGILNHLGSDGLSHLRKLASAT
RERLPADDEEVDIPDLVQNFENAMGSSENNEVNVDEAIETKHVPTETVD
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g8395.t1 | Gene3D | G3DSA:2.20.70.30 | - | 48 | 105 | 2.9E-31 |
| 4 | g8395.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 145 | 169 | - |
| 5 | g8395.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 154 | 169 | - |
| 2 | g8395.t1 | PANTHER | PTHR10351 | TRANSCRIPTION FACTOR BTF3 FAMILY MEMBER | 1 | 156 | 4.2E-64 |
| 1 | g8395.t1 | Pfam | PF01849 | NAC domain | 36 | 92 | 1.1E-22 |
| 7 | g8395.t1 | ProSiteProfiles | PS51151 | NAC A/B domain profile. | 33 | 98 | 17.146 |
| 3 | g8395.t1 | SMART | SM01407 | NAC_2 | 36 | 92 | 2.3E-24 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K01527 (nascent polypeptide-associated complex subunit beta)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
