General information for g8395.t6
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Transcription factor BTF3 homolog 4.
Parent gene
- The parent gene g8395 is located on chr_2: 30149797..30150535 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8395 | g8395.t6 | TTS | g8395.t6 | 30149639 | 30149639 |
| chr_2 | g8395 | g8395.t6 | isoform | g8395.t6 | 30149797 | 30150535 |
| chr_2 | g8395 | g8395.t6 | exon | g8395.t6.exon1 | 30149797 | 30150027 |
| chr_2 | g8395 | g8395.t6 | cds | g8395.t6.CDS1 | 30149797 | 30150027 |
| chr_2 | g8395 | g8395.t6 | exon | g8395.t6.exon2 | 30150111 | 30150346 |
| chr_2 | g8395 | g8395.t6 | cds | g8395.t6.CDS2 | 30150111 | 30150346 |
| chr_2 | g8395 | g8395.t6 | exon | g8395.t6.exon3 | 30150490 | 30150535 |
| chr_2 | g8395 | g8395.t6 | cds | g8395.t6.CDS3 | 30150490 | 30150535 |
| chr_2 | g8395 | g8395.t6 | TSS | g8395.t6 | 30150617 | 30150617 |
Sequences
>g8395.t6 Gene=g8395 Length=513
ATGAATCCTGAAAAGTTGAAGAAACTACAGGCAGAAGTTCGTATTGAATCTACAAAAGGG
ATGCCAAGACGAAAGAAGAAGGTAGTGCATCAGAGTGCAGCAACAGATGACAAAAAATTG
CAATCAACATTGAAAAAATTGGCTGTTAACAATATTCCCGGAATTGAAGAAGTTAATATG
ATGAAAAATGACGGTAATGTGATTCATTTTAATAATCCAAGAACACAAGCATCTCTACAG
TCGAACATTTTTGCCATAACTGGACATGCTGAAACAAAGAATATTGCTGAAATGCTGCCT
GGAATTCTCAATCACTTGGGTTCTGATGGTCTTTCACATTTGAGAAAACTTGCTTCTGCC
ACACGTGAACGCTTGCCTGCTGATGATGAAGAGGTCGACATTCCAGATTTAGTTCAAAAT
TTTGAAAATGCAATGGGTAGCAGTGAGAATAATGAAGTTAATGTAGATGAAGCAATCGAA
ACAAAGCATGTTCCAACTGAAACTGTGGATTAG
>g8395.t6 Gene=g8395 Length=170
MNPEKLKKLQAEVRIESTKGMPRRKKKVVHQSAATDDKKLQSTLKKLAVNNIPGIEEVNM
MKNDGNVIHFNNPRTQASLQSNIFAITGHAETKNIAEMLPGILNHLGSDGLSHLRKLASA
TRERLPADDEEVDIPDLVQNFENAMGSSENNEVNVDEAIETKHVPTETVD
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g8395.t6 | Gene3D | G3DSA:2.20.70.30 | - | 49 | 106 | 3.0E-31 |
| 5 | g8395.t6 | MobiDBLite | mobidb-lite | consensus disorder prediction | 146 | 170 | - |
| 4 | g8395.t6 | MobiDBLite | mobidb-lite | consensus disorder prediction | 155 | 170 | - |
| 2 | g8395.t6 | PANTHER | PTHR10351 | TRANSCRIPTION FACTOR BTF3 FAMILY MEMBER | 1 | 157 | 3.7E-60 |
| 1 | g8395.t6 | Pfam | PF01849 | NAC domain | 37 | 93 | 1.1E-22 |
| 7 | g8395.t6 | ProSiteProfiles | PS51151 | NAC A/B domain profile. | 34 | 99 | 17.146 |
| 3 | g8395.t6 | SMART | SM01407 | NAC_2 | 37 | 93 | 2.3E-24 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K01527 (nascent polypeptide-associated complex subunit beta)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
