General information for g8416.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g8416 is located on chr_2: 30353005..30353630 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8416 | g8416.t1 | TTS | g8416.t1 | 30352873 | 30352873 |
| chr_2 | g8416 | g8416.t1 | isoform | g8416.t1 | 30353005 | 30353630 |
| chr_2 | g8416 | g8416.t1 | exon | g8416.t1.exon1 | 30353005 | 30353226 |
| chr_2 | g8416 | g8416.t1 | cds | g8416.t1.CDS1 | 30353005 | 30353226 |
| chr_2 | g8416 | g8416.t1 | exon | g8416.t1.exon2 | 30353289 | 30353630 |
| chr_2 | g8416 | g8416.t1 | cds | g8416.t1.CDS2 | 30353289 | 30353630 |
| chr_2 | g8416 | g8416.t1 | TSS | g8416.t1 | NA | NA |
Sequences
>g8416.t1 Gene=g8416 Length=564
ATGCAAATTTTGACTAATTTATGGGCAATTCAAAAATGGATACGTACACAAAAAGTTTAT
CAATTCTATTCGAGTTCAATCTTGATTGTTTACGATGCCAGAAAGTTACGACATGTTCTT
GAATTGCAAAAACGACAAAATTCATCAAATGATGGTAGCAATGGAAATTTGAGTCCATCT
AGTCCAACAGCAACTGATAGTAGCTTGAAACCAAGTCGTAGCAGCTCTAATCGTGGTTCA
GGTGATTCACTTAATGCAATTGAAACTATTAGCTCAACACCACCAAAGACAATTTATCGA
AAAATTCAACGTTCACATTCCTCAATGAATAATTATGAACAGGAAATGAAAAAGATGAAA
GATAATTATGCAATAATGTTGGACAGTCTTGTTGGAACATATGATAAAAATAAAGATTGG
GTTCATGTAAAAATGATTGATTTTGCACATACATTTAATAATAATGAAATGGAAGGACAA
GTTGCATCGATTGATAAAAATTATTTGGAAGGAATTGAACATTTGGTGGAAATTTTTGAA
GAATTATTAAAGCAGTGCGAGTAA
>g8416.t1 Gene=g8416 Length=187
MQILTNLWAIQKWIRTQKVYQFYSSSILIVYDARKLRHVLELQKRQNSSNDGSNGNLSPS
SPTATDSSLKPSRSSSNRGSGDSLNAIETISSTPPKTIYRKIQRSHSSMNNYEQEMKKMK
DNYAIMLDSLVGTYDKNKDWVHVKMIDFAHTFNNNEMEGQVASIDKNYLEGIEHLVEIFE
ELLKQCE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 10 | g8416.t1 | Coils | Coil | Coil | 102 | 129 | - |
| 9 | g8416.t1 | Coils | Coil | Coil | 169 | 187 | - |
| 8 | g8416.t1 | Gene3D | G3DSA:1.10.510.50 | - | 1 | 57 | 2.7E-9 |
| 7 | g8416.t1 | Gene3D | G3DSA:1.10.510.50 | - | 67 | 187 | 4.3E-11 |
| 6 | g8416.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 44 | 87 | - |
| 5 | g8416.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 45 | 87 | - |
| 2 | g8416.t1 | PANTHER | PTHR12400:SF51 | INOSITOL POLYPHOSPHATE MULTIKINASE | 2 | 185 | 1.7E-17 |
| 3 | g8416.t1 | PANTHER | PTHR12400 | INOSITOL POLYPHOSPHATE KINASE | 2 | 185 | 1.7E-17 |
| 1 | g8416.t1 | Pfam | PF03770 | Inositol polyphosphate kinase | 3 | 180 | 2.2E-17 |
| 4 | g8416.t1 | SUPERFAMILY | SSF56104 | SAICAR synthase-like | 2 | 184 | 3.2E-17 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016301 | kinase activity | MF |
| GO:0032958 | inositol phosphate biosynthetic process | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
