Gene loci information

Isoforms of this gene

  • There are 1 isoforms that are expressed from this gene.
  • The longest transcript is g8517.t1
  • List of isoforms

g8517.t1

The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively.

KEGG

Pathway

  • This gene belongs to the following 1 pathways
ko04120

Gene conservation patterns

Diptera wide analysis

The Orthogroup for the longest transcript (g8517.t1) is OG0001337. Other genes in this orthogroup contains the following. This list is ordered by phylogeny determined by OrthoFinder analysis. Genes from ENSEMBL are linked to their corresponding pages. For P. nubifer and P. vanderplanki, they are linked to the Midgebase1 and Midgebase2 pages.

Conservation

Organism Abb. ID No. Orthologs Ortholog ID
Atta cephalotes ACEPH 1 XP_012060903.1
Apis mellifera AMELL 1 GB42193-PA
Culicoides sonorensis CSONO 1 CSON002134-1
Polypedilum nubifer PNUBI 1 Pn.06346
Polypedilum vanderplanki PVAND 1 g8517.t1
Polypedilum pembai PPEMB 1 g11752.t1
Belgica antarctica BANTA 1 IU25_11057-mRNA-1
Clunio marinus CMARI 1 CRK96214.1
Aedes aegypti lvpagwg AAEGYL 1 AAEL022725-PA
Culex quinquefasciatus quinquefasciatus CQUINQ 1 EDS43211.1
Culex quinquefasciatus CQUIN 1 CPIJ004529-PA
Anopheles atroparvus AATRO 1 AATE019447-PA
Anopheles sinensis china ASINEC 1 ASIC010408-PA
Anopheles dirus ADIRU 1 ADIR009223-PA
Anopheles farauti AFARA 1 AFAF003473-PA
Anopheles epiroticus AEPIR 1 AEPI010085-PA
Anopheles christyi ACHRI 1 ACHR002539-PA
Anopheles merus AMERU 1 AMEM010661-PA
Anopheles melas AMELA 1 AMEC021639-PA
Anopheles arabiensis AARAB 1 AARA006075-PA
Anopheles coluzzii ACOLU 1 ACOM038349-PA
Anopheles coluzzii ngousso ACOLUN 1 ACON004889-PA
Anopheles gambiae AGAMB 1 AGAP004889-PA
Anopheles quadriannulatus AQUAD 1 AQUA011473-PA
Anopheles minimus AMINI 1 AMIN008173-PA
Anopheles culicifacies ACULI 1 ACUA021038-PA
Anopheles funestus AFUNE 1 AFUN006768-PA
Anopheles stephensi indian ASTEPI 1 ASTEI10369-PA
Anopheles stephensi ASTEP 1 ASTE011343-PA
Anopheles albimanus AALBI 1 AALB004747-PA
Anopheles darlingi ADARL 1 ADAC010470-PA
Drosophila willistoni DWILL 1 FBpp0245772
Drosophila pseudoobscura DPSEU 3 FBpp0285999, FBpp0274291, FBpp0286232
Drosophila persimilis DPERS 3 FBpp0175891, FBpp0176823, FBpp0184821
Drosophila ananassae DANAN 1 FBpp0128347
Drosophila melanogaster DMELA 1 FBpp0076124
Drosophila sechellia DSECH 1 FBpp0206654
Drosophila simulans DSIMU 1 FBpp0212609
Drosophila erecta DEREC 1 FBpp0133948
Drosophila yakuba DYAKU 1 FBpp0265877
Drosophila virilis DVIRI 3 FBpp0226450, FBpp0233386, FBpp0233895
Drosophila mojavensis DMOJA 3 FBpp0162480, FBpp0386726, FBpp0164032
Drosophila grimshawi DGRIM 1 FBpp0150224
Lucilia cuprina LCUPR 1 KNC30379
Musca domestica MDOME 1 MDOA003437-PA
Stomoxys calcitrans SCALC 1 SCAU006664-PA
Glossina brevipalpis GBREV 4 GBRI031518-PA, GBRI022673-PA, GBRI019199-PA, GBRI039383-PA
Glossina palpalis GPALP 5 GPPI019558-PA, GPPI042940-PA, GPPI014132-PA, GPPI043154-PA, GPPI013550-PA
Glossina austeni GAUST 4 GAUT033190-PA, GAUT028396-PA, GAUT024737-PA, GAUT051005-PA
Glossina pallidipes GPALL 4 GPAI004593-PA, GPAI033406-PA, GPAI037452-PA, GPAI046510-PA
Glossina morsitans GMORS 3 GMOY011320-PA, GMOY009593-PA, GMOY002135-PA

Gene tree

Chironomidae-wide analysis

The Orthogroup for the longest transcript (g8517.t1) is OG0005094. Other genes in this orthogroup contains the following. [This data uses ab initio gene models predicted in Yoshida et al 2022, so most genes are not registered in public databases. Please contact the authors for more information on these data.]

Conservation

Organism Abb. ID Ortholog ID
Podonomus sp PODON none
Parochlus steinenii PSTEI PSG01718
Trissopelopia nemorum TNEMO TRINITY_DN6263_c0_g1_i5.p1
Paraheptagyia tonnoiri PTONN TRINITY_DN677_c0_g1_i1.p1
Telmatogeton pecinata TPECI TRINITY_DN3597_c0_g1_i1.p1, TRINITY_DN0_c5444_g1_i1.p2
Cricotopus draysoni CDRAY TRINITY_DN73398_c0_g1_i1.p1, TRINITY_DN45510_c0_g1_i1.p1, TRINITY_DN32381_c0_g1_i1.p1, TRINITY_DN73502_c0_g1_i1.p1
Clunio marinus CMARI CRK96214.1
Cardiocladius sp CARDI TRINITY_DN63921_c0_g1_i1.p1
Belgica antarctica BANTA IU25_11057-mRNA-1
Kiefferophyes invenustulus KINVE TRINITY_DN9295_c0_g1_i3.p1, TRINITY_DN263550_c0_g1_i1.p1
Chironomus riparius CRIPA g1413.t1
Chironomus columbiensis CCOLU TRINITY_DN19166_c0_g2_i1.p1, TRINITY_DN21564_c0_g1_i1.p1, TRINITY_DN80001_c0_g1_i1.p4
Chironomus tentans CTENT g4797.t1
Chironomus dilutus CDILU none
Polypedilum nubifer PNUBI Pn.06346
Polypedilum vanderplanki PVAND g8528.t1, g8524.t1, g8517.t1
Polypedilum pembai PPEMB g11752.t1
Culicoides sonorensis CSONO CSON002134-1
Aedes aegypti lvpagwg AAEGYL AAEL022725-PA
Anopheles gambiae AGAMB AGAP004889-PA

Gene tree

Expression profile for this gene

Gene-level expression profile

Raw TPM values

Expression profile of isoforms

A heatmap representing isoforms with TPM > 0 in at least one sample. Expression profiles were are clustered based on the spearman correlation