Gene loci information

Transcript annotation

  • This transcript has been annotated as Pyrimidodiazepine synthase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g8541 g8541.t16 TSS g8541.t16 31195210 31195210
chr_2 g8541 g8541.t16 isoform g8541.t16 31195315 31196452
chr_2 g8541 g8541.t16 exon g8541.t16.exon1 31195315 31196053
chr_2 g8541 g8541.t16 cds g8541.t16.CDS1 31195582 31196053
chr_2 g8541 g8541.t16 exon g8541.t16.exon2 31196110 31196293
chr_2 g8541 g8541.t16 cds g8541.t16.CDS2 31196110 31196293
chr_2 g8541 g8541.t16 exon g8541.t16.exon3 31196419 31196452
chr_2 g8541 g8541.t16 cds g8541.t16.CDS3 31196419 31196452
chr_2 g8541 g8541.t16 TTS g8541.t16 31196549 31196549

Sequences

>g8541.t16 Gene=g8541 Length=957
ATGAGTAAATTACATTTATCAAAAGGTAAGTATTATAAGTTATTTATTTAGAATAATCTG
GAAATTAAAAAGTGATCTATATTTATGCAAATGACATCATCACCGGCTTCATTTATTCAT
GAAATATGATAAAACTAATTAAAAATAATTGTTAATTAGGTTTATTTTATGATTAATTAA
AGAAATCAATTTCTTTCATTTTACATTTCTTCATTAGGTTCAACTCAACCAACTTTTCCT
GATGATCAAAAGCTTCGACTTTATTCAATGAGATTTTGTCCTTTCGCTCAACGTGCTCAT
CTCGTGCTCGATGCAAAAAATATTCCGTATCATACTGCCTTTATTAATTTAACAGAAAAG
CCGGAATGGTTTACTAAAGTTTCTGCTTTGTCAAAAGTTCCAGCACTTGAAATTCCAGAA
AGTGGCGATGTACTCATTGAATCTTTGATAATTGCTGACTATCTCGATGAAAAATATCCT
CAAAATCCATTACACTCAAAAAATCCATTAGAAAAGGCTCGAGATAGAATTCTTATTGAA
AGATTTAATGGATTTACTGCTCCATTTGCTCGAATTATATATAACCATAAGAAAGATGGA
GCTCCGGGTGCGATTCATGAAATAGTCACAATTTTAGACTTGTTTGAAGAAGAACTTAAA
AAGAGAGGAGCAAAATTCTTTGGTGGTTCCAAACCAGGAATGCTCGATTATATGATTTGG
CCTTGGTGTGAACGAACAGATATGTTAAAATATATGTTGGGCGATAAATATGAACTTGAT
AAAGTTCGATTTAGTGAACTCATTAAATGGAAGGAGGAAATGAAAAAAGACAAAGCCGTT
AAGGAACATTATATTTCAGCCGAAGATCATTATAAATTTATATCATTGAGACTTGCAAAT
ACTCCTGATTATGATTTTCTGGCGCCAACGGCTGCAAAAAAAATTCGCTTATCATAG

>g8541.t16 Gene=g8541 Length=229
MRFCPFAQRAHLVLDAKNIPYHTAFINLTEKPEWFTKVSALSKVPALEIPESGDVLIESL
IIADYLDEKYPQNPLHSKNPLEKARDRILIERFNGFTAPFARIIYNHKKDGAPGAIHEIV
TILDLFEEELKKRGAKFFGGSKPGMLDYMIWPWCERTDMLKYMLGDKYELDKVRFSELIK
WKEEMKKDKAVKEHYISAEDHYKFISLRLANTPDYDFLAPTAAKKIRLS

Protein features from InterProScan

Transcript Database ID Name Start End E.value
9 g8541.t16 Gene3D G3DSA:3.40.30.10 Glutaredoxin 1 205 0.000
8 g8541.t16 Gene3D G3DSA:1.20.1050.10 - 79 199 0.000
3 g8541.t16 PANTHER PTHR43968 - 1 218 0.000
5 g8541.t16 PRINTS PR01625 Omega-class glutathione S-transferase signature 70 84 0.000
4 g8541.t16 PRINTS PR01625 Omega-class glutathione S-transferase signature 137 156 0.000
2 g8541.t16 Pfam PF13417 Glutathione S-transferase, N-terminal domain 1 74 0.000
1 g8541.t16 Pfam PF13410 Glutathione S-transferase, C-terminal domain 118 164 0.000
11 g8541.t16 ProSiteProfiles PS50404 Soluble glutathione S-transferase N-terminal domain profile. 1 74 18.084
10 g8541.t16 ProSiteProfiles PS50405 Soluble glutathione S-transferase C-terminal domain profile. 79 217 16.574
12 g8541.t16 SFLD SFLDG00358 Main (cytGST) 1 187 0.000
13 g8541.t16 SFLD SFLDS00019 Glutathione Transferase (cytosolic) 1 187 0.000
6 g8541.t16 SUPERFAMILY SSF52833 Thioredoxin-like 2 96 0.000
7 g8541.t16 SUPERFAMILY SSF47616 GST C-terminal domain-like 78 217 0.000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0004364 glutathione transferase activity MF
GO:0006749 glutathione metabolic process BP
GO:0005515 protein binding MF
GO:0005737 cytoplasm CC

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed