Chromosome | Gene | Transcript | Category | ID | Start | End |
---|---|---|---|---|---|---|
chr_2 | g8541 | g8541.t16 | TSS | g8541.t16 | 31195210 | 31195210 |
chr_2 | g8541 | g8541.t16 | isoform | g8541.t16 | 31195315 | 31196452 |
chr_2 | g8541 | g8541.t16 | exon | g8541.t16.exon1 | 31195315 | 31196053 |
chr_2 | g8541 | g8541.t16 | cds | g8541.t16.CDS1 | 31195582 | 31196053 |
chr_2 | g8541 | g8541.t16 | exon | g8541.t16.exon2 | 31196110 | 31196293 |
chr_2 | g8541 | g8541.t16 | cds | g8541.t16.CDS2 | 31196110 | 31196293 |
chr_2 | g8541 | g8541.t16 | exon | g8541.t16.exon3 | 31196419 | 31196452 |
chr_2 | g8541 | g8541.t16 | cds | g8541.t16.CDS3 | 31196419 | 31196452 |
chr_2 | g8541 | g8541.t16 | TTS | g8541.t16 | 31196549 | 31196549 |
>g8541.t16 Gene=g8541 Length=957
ATGAGTAAATTACATTTATCAAAAGGTAAGTATTATAAGTTATTTATTTAGAATAATCTG
GAAATTAAAAAGTGATCTATATTTATGCAAATGACATCATCACCGGCTTCATTTATTCAT
GAAATATGATAAAACTAATTAAAAATAATTGTTAATTAGGTTTATTTTATGATTAATTAA
AGAAATCAATTTCTTTCATTTTACATTTCTTCATTAGGTTCAACTCAACCAACTTTTCCT
GATGATCAAAAGCTTCGACTTTATTCAATGAGATTTTGTCCTTTCGCTCAACGTGCTCAT
CTCGTGCTCGATGCAAAAAATATTCCGTATCATACTGCCTTTATTAATTTAACAGAAAAG
CCGGAATGGTTTACTAAAGTTTCTGCTTTGTCAAAAGTTCCAGCACTTGAAATTCCAGAA
AGTGGCGATGTACTCATTGAATCTTTGATAATTGCTGACTATCTCGATGAAAAATATCCT
CAAAATCCATTACACTCAAAAAATCCATTAGAAAAGGCTCGAGATAGAATTCTTATTGAA
AGATTTAATGGATTTACTGCTCCATTTGCTCGAATTATATATAACCATAAGAAAGATGGA
GCTCCGGGTGCGATTCATGAAATAGTCACAATTTTAGACTTGTTTGAAGAAGAACTTAAA
AAGAGAGGAGCAAAATTCTTTGGTGGTTCCAAACCAGGAATGCTCGATTATATGATTTGG
CCTTGGTGTGAACGAACAGATATGTTAAAATATATGTTGGGCGATAAATATGAACTTGAT
AAAGTTCGATTTAGTGAACTCATTAAATGGAAGGAGGAAATGAAAAAAGACAAAGCCGTT
AAGGAACATTATATTTCAGCCGAAGATCATTATAAATTTATATCATTGAGACTTGCAAAT
ACTCCTGATTATGATTTTCTGGCGCCAACGGCTGCAAAAAAAATTCGCTTATCATAG
>g8541.t16 Gene=g8541 Length=229
MRFCPFAQRAHLVLDAKNIPYHTAFINLTEKPEWFTKVSALSKVPALEIPESGDVLIESL
IIADYLDEKYPQNPLHSKNPLEKARDRILIERFNGFTAPFARIIYNHKKDGAPGAIHEIV
TILDLFEEELKKRGAKFFGGSKPGMLDYMIWPWCERTDMLKYMLGDKYELDKVRFSELIK
WKEEMKKDKAVKEHYISAEDHYKFISLRLANTPDYDFLAPTAAKKIRLS
Transcript | Database | ID | Name | Start | End | E.value | |
---|---|---|---|---|---|---|---|
9 | g8541.t16 | Gene3D | G3DSA:3.40.30.10 | Glutaredoxin | 1 | 205 | 0.000 |
8 | g8541.t16 | Gene3D | G3DSA:1.20.1050.10 | - | 79 | 199 | 0.000 |
3 | g8541.t16 | PANTHER | PTHR43968 | - | 1 | 218 | 0.000 |
5 | g8541.t16 | PRINTS | PR01625 | Omega-class glutathione S-transferase signature | 70 | 84 | 0.000 |
4 | g8541.t16 | PRINTS | PR01625 | Omega-class glutathione S-transferase signature | 137 | 156 | 0.000 |
2 | g8541.t16 | Pfam | PF13417 | Glutathione S-transferase, N-terminal domain | 1 | 74 | 0.000 |
1 | g8541.t16 | Pfam | PF13410 | Glutathione S-transferase, C-terminal domain | 118 | 164 | 0.000 |
11 | g8541.t16 | ProSiteProfiles | PS50404 | Soluble glutathione S-transferase N-terminal domain profile. | 1 | 74 | 18.084 |
10 | g8541.t16 | ProSiteProfiles | PS50405 | Soluble glutathione S-transferase C-terminal domain profile. | 79 | 217 | 16.574 |
12 | g8541.t16 | SFLD | SFLDG00358 | Main (cytGST) | 1 | 187 | 0.000 |
13 | g8541.t16 | SFLD | SFLDS00019 | Glutathione Transferase (cytosolic) | 1 | 187 | 0.000 |
6 | g8541.t16 | SUPERFAMILY | SSF52833 | Thioredoxin-like | 2 | 96 | 0.000 |
7 | g8541.t16 | SUPERFAMILY | SSF47616 | GST C-terminal domain-like | 78 | 217 | 0.000 |
IUPRED3 score over 0.5 is predictive of a disordered region.
GOID | TERM | ONTOLOGY |
---|---|---|
GO:0004364 | glutathione transferase activity | MF |
GO:0006749 | glutathione metabolic process | BP |
GO:0005515 | protein binding | MF |
GO:0005737 | cytoplasm | CC |
TPM values are indicated as average +/- STDEV.
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed