Gene loci information

Transcript annotation

  • This transcript has been annotated as Pyrimidodiazepine synthase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g8541 g8541.t2 isoform g8541.t2 31187216 31196452
chr_2 g8541 g8541.t2 exon g8541.t2.exon1 31187216 31187288
chr_2 g8541 g8541.t2 TSS g8541.t2 31187222 31187222
chr_2 g8541 g8541.t2 cds g8541.t2.CDS1 31187249 31187288
chr_2 g8541 g8541.t2 exon g8541.t2.exon2 31195532 31196053
chr_2 g8541 g8541.t2 cds g8541.t2.CDS2 31195532 31196053
chr_2 g8541 g8541.t2 exon g8541.t2.exon3 31196110 31196452
chr_2 g8541 g8541.t2 cds g8541.t2.CDS3 31196110 31196297
chr_2 g8541 g8541.t2 TTS g8541.t2 31196549 31196549

Sequences

>g8541.t2 Gene=g8541 Length=938
ATCGAGGACATTTCATAAGTTGCCTTCAACGCAATGAAATTGTTTATTATTTGGAAATAT
TTGATTAAATCAAGTTCAACTCAACCAACTTTTCCTGATGATCAAAAGCTTCGACTTTAT
TCAATGAGATTTTGTCCTTTCGCTCAACGTGCTCATCTCGTGCTCGATGCAAAAAATATT
CCGTATCATACTGCCTTTATTAATTTAACAGAAAAGCCGGAATGGTTTACTAAAGTTTCT
GCTTTGTCAAAAGTTCCAGCACTTGAAATTCCAGAAAGTGGCGATGTACTCATTGAATCT
TTGATAATTGCTGACTATCTCGATGAAAAATATCCTCAAAATCCATTACACTCAAAAAAT
CCATTAGAAAAGGCTCGAGATAGAATTCTTATTGAAAGATTTAATGGATTTACTGCTCCA
TTTGCTCGAATTATATATAACCATAAGAAAGATGGAGCTCCGGGTGCGATTCATGAAATA
GTCACAATTTTAGACTTGTTTGAAGAAGAACTTAAAAAGAGAGGAGCAAAATTCTTTGGT
GGTTCCAAACCAGGAATGCTCGATTATATGATTTGGCCTTGGTGTGAACGAACAGATATG
TTAAAATATATGTTGGGCGATAAATATGAACTTGATAAAGTTCGATTTAGTGAACTCATT
AAATGGAAGGAGGAAATGAAAAAAGACAAAGCCGTTAAGGAACATTATATTTCAGCCGAA
GATCATTATAAATTTATATCATTGAGACTTGCAAATACTCCTGATTATGATTTTCTGGCG
TAAGTTCCTACTTTCTGTCGAAACTTGTCCTTTCTCAAATTCTGAATTTTCTAATCACTT
TCGCTTTTATTGTCTTTTAACAAATTAATTTAAAAGTCGTTATTTTGTATTATCTTCATC
GTAGGCCAACGGCTGCAAAAAAAATTCGCTTATCATAG

>g8541.t2 Gene=g8541 Length=249
MKLFIIWKYLIKSSSTQPTFPDDQKLRLYSMRFCPFAQRAHLVLDAKNIPYHTAFINLTE
KPEWFTKVSALSKVPALEIPESGDVLIESLIIADYLDEKYPQNPLHSKNPLEKARDRILI
ERFNGFTAPFARIIYNHKKDGAPGAIHEIVTILDLFEEELKKRGAKFFGGSKPGMLDYMI
WPWCERTDMLKYMLGDKYELDKVRFSELIKWKEEMKKDKAVKEHYISAEDHYKFISLRLA
NTPDYDFLA

Protein features from InterProScan

Transcript Database ID Name Start End E.value
10 g8541.t2 Gene3D G3DSA:3.40.30.10 Glutaredoxin 22 235 0.000
9 g8541.t2 Gene3D G3DSA:1.20.1050.10 - 109 229 0.000
3 g8541.t2 PANTHER PTHR43968 - 12 247 0.000
5 g8541.t2 PRINTS PR01625 Omega-class glutathione S-transferase signature 24 39 0.000
6 g8541.t2 PRINTS PR01625 Omega-class glutathione S-transferase signature 100 114 0.000
4 g8541.t2 PRINTS PR01625 Omega-class glutathione S-transferase signature 167 186 0.000
2 g8541.t2 Pfam PF13417 Glutathione S-transferase, N-terminal domain 28 104 0.000
1 g8541.t2 Pfam PF13410 Glutathione S-transferase, C-terminal domain 148 194 0.000
12 g8541.t2 ProSiteProfiles PS50404 Soluble glutathione S-transferase N-terminal domain profile. 24 104 20.094
11 g8541.t2 ProSiteProfiles PS50405 Soluble glutathione S-transferase C-terminal domain profile. 109 247 16.574
13 g8541.t2 SFLD SFLDG00358 Main (cytGST) 26 217 0.000
14 g8541.t2 SFLD SFLDS00019 Glutathione Transferase (cytosolic) 26 217 0.000
7 g8541.t2 SUPERFAMILY SSF52833 Thioredoxin-like 25 126 0.000
8 g8541.t2 SUPERFAMILY SSF47616 GST C-terminal domain-like 108 247 0.000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0004364 glutathione transferase activity MF
GO:0006749 glutathione metabolic process BP
GO:0005515 protein binding MF
GO:0005737 cytoplasm CC

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed