General information for g8552.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Fatty acid synthase.
Parent gene
- The parent gene g8552 is located on chr_2: 31273908..31280799 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8552 | g8552.t1 | isoform | g8552.t1 | 31273908 | 31280799 |
| chr_2 | g8552 | g8552.t1 | exon | g8552.t1.exon1 | 31273908 | 31274314 |
| chr_2 | g8552 | g8552.t1 | cds | g8552.t1.CDS1 | 31273908 | 31274314 |
| chr_2 | g8552 | g8552.t1 | exon | g8552.t1.exon2 | 31274367 | 31274758 |
| chr_2 | g8552 | g8552.t1 | cds | g8552.t1.CDS2 | 31274367 | 31274758 |
| chr_2 | g8552 | g8552.t1 | exon | g8552.t1.exon3 | 31274815 | 31275164 |
| chr_2 | g8552 | g8552.t1 | cds | g8552.t1.CDS3 | 31274815 | 31275164 |
| chr_2 | g8552 | g8552.t1 | exon | g8552.t1.exon4 | 31275663 | 31280061 |
| chr_2 | g8552 | g8552.t1 | cds | g8552.t1.CDS4 | 31275663 | 31280061 |
| chr_2 | g8552 | g8552.t1 | exon | g8552.t1.exon5 | 31280120 | 31280323 |
| chr_2 | g8552 | g8552.t1 | cds | g8552.t1.CDS5 | 31280120 | 31280323 |
| chr_2 | g8552 | g8552.t1 | exon | g8552.t1.exon6 | 31280384 | 31280799 |
| chr_2 | g8552 | g8552.t1 | cds | g8552.t1.CDS6 | 31280384 | 31280799 |
| chr_2 | g8552 | g8552.t1 | TSS | g8552.t1 | NA | NA |
| chr_2 | g8552 | g8552.t1 | TTS | g8552.t1 | NA | NA |
Sequences
>g8552.t1 Gene=g8552 Length=6168
ATGAGTGAAAAAAGTGATGATGTGGTTATAAGTGGAATTGCTGGCCGATTTCCAAAATCT
CGAAATTTAAAAGAATTCAGTGAGAATTTATTTAAAAAAGTAGATATGACTGATGACAGT
GAAGTTCTTTGGAAACACATCCTTGAAAATATTCCTAAACGTAGTGGAAAAATTACTGAT
CTCGATAAATTCGATGCGAAATTTTTTTCCATGATGAATAATCAAGCAAATCTTACCGAT
CCACAATTAAGAATTTTATTTGAGCATGTTTATGAAGCAATTTTAGATGCAGGCATAAGT
CCTCAATCTTTAATTGAAAGTAATACTGGTGTCATTATTGGTTGTAGTATGTCAGAATCC
ATGTTTACTTATACAAAAGGATCATCCGTTGCTGAAAGTGGTGCCGCAACTTATAACAAT
GGACCATTCTTTCTTGCGAGTAAAATTTCTTATACTTTTGGTTTTCGTGGACCAGCACTT
ATTATTGATACAGCTTGCTCTAGTGCTGCAAGTGCATTGAATTGTGCTCTTAAATATATT
AAACAAAATGAGTGTGATGCTGCGATTGTAGCTGGCAGTCATCTTAATCTGGGTCCACGA
ATGTTTATAGAGTTTTCTGGCTTAGGTGCATTAACTCCAGATGGAATTTCTAAAGTTTTT
GATGAAGATTCAAAAGGTTTCGTTCGTTCAGATGCAATTGCTGCCGTATTTCTTCAAAAA
CGTAAAGATGCTAAGCGAATTTATGCCCAACTTGTTCATTCATTATCAAATAATGATGGA
TTCAAACATGAAGGAATACTTTTACCTTCAAAAGAAGTTCAACAGTTACTCATGGAAAGA
TTATATAAAGAAGTCAATATTGACCCAAGTGAAATTAATTATTTTGAGGCTCATGCAACT
GGAACTAAACTTGGAGATTTTCAGGAAATTGGAGCAGTTGATGAAGTTTTTTGCAAGAAA
AATCGTCAAAATAATTTAATTGTTGGTAGTGTTAAATCAAATTTGGGCCATGCTGAAGCT
GCTAGTGCAATGCCTTCTTTGGCAAAAATTTTGATAGCTTTTGAAAGTGGAAAAATTCCA
CCAAATATAAATTTGAATAAACTTCGCGAAGATATTCCAGCTTTTGCAGAAGGAAGAATC
GAAGTTGCAACAGATGCTGTACCATTAACATCGGAATATATTTCAATGAATAGCTTCGGT
TTTGGTGGTTATAATGTTCATCTTTTATTTAAAAGAAATTCAAAGCAAAAAATTATTACA
AATATTGGCAATATTGAGCGAATGGTTTTATGGTCAGGAAGAACAGAAGATGCTGTTCAT
GCAATTTTTGATGATATCATAAGTCGTCCACTTGATATCGAATATATTGCATTACTTCAA
AACACTCAAACTATCACACCAAATTTAAATTGTTATCGAGGTTTTGGAATTTTCAAAAAT
AACGAAGAAAACACAATTTGTATTGAACGAAATGTTCAAAGTTTCGATGGTATTCGTCGT
CAAATTGTTTTTTCATATGCTGGTATGGGATCACAATGGCATAAAATGGGACAAGATTTA
ATGGCAATTGAATTGTTTACTGAATCAATTGAAAAATGTCATGAAATTTTACTTGAAAAT
CAAATTAATTTGAAATCAATTTTAAATTCAAATGATGAAAAAATTTATGAAAATGTCTTG
AATGCTTATGTTGGAATTATTTCTATACAAATAGCTCTAACTGATGTTTTGTATGCTCTT
AATGTTAAACCAGATTGGATTGTTGGTCATTCAGTTGGAGAAATAGCTTGTGCTTATGCA
GATGGATGTTTGACAATGAAAGAAGCTTTAAATATTGCATATTTGAGAGCTAAACTCACT
CTTGATCTTAACATAAATGGCGGAGCAATGGCAGTTGTTGGAATGAGTAGTGAAGAACTG
GAGAAGATTTTGTCATATGATATTGATATTGCTTGTTATAATGCAAAAGAATTGATAACA
ATCAGTGGGAATAAGAAAGTCATTTCTGAATTTGTTGATCAATTAAAATCACAAAATATT
TTTGCAAAAGAAATTGAATGTGCTGGAGTTCCATTCCATAGTCGACATATGACTGTTATG
GCAAAAAAATTTGAAGAAAAATTACAAGATCTTTTAAAGACACCAAAAATGCGATCTAAC
AAATGGATAACAAGCACTTATAATGAAGAAAATGAGCAGAATAAAATTTGTAACATAAAA
TATCAAACTGACAACGTTACAAATTCTGTTTACTTTGATAAAGCTATTGAAAATCTTCCT
AAAAATTCTTTGATTATTGAAATTTCCCCTCATGGTTTACTTAAAACATTCTTTAAATTA
TCTTCGAATGAAAGTATTTATGAAAGATTAATGAATAAAAATTCGAAAAATCATAAAGAT
TTCTTTATGCAATCTCTCGGAAAAATATTTCAACATGGAGTTGATTTGGATATAAGTAAA
TTGTATCCAGCTATTAAATTTCCAGTTTCTCGAGGTACTTCAATGATTTCACCATTAATC
AAATGGAATCATGAGCATAATTATTTTGTGCCAATGTTCGATCATGATTTTGAATTTAGT
CGTTTTTCAAAAATATTCAACTTTAATTCTCCAGAATATTCTTATGTTTATGATCACGTT
ATTGATGGAAAAGCAATAATTCCTGCTATGTTTTGGATACACTCTATTTGGAAATATTTT
GCAGCATTTTGTGAAAGAAAATGGTACGAAACTAAAATAACACTAACAAAAGTTGAATGT
GTTCAATTAGCTTATCCAGATAAGGAAGTAAAAATAACTTTATTGATGAATAGAAAAACT
GGAAATGTTGAAATTTATTGTGGTAACAATCTAATTATGAAAGCCATTGCAAAATGTGAT
GATAATGTGCAAATTGATGAAATTGAAGATTCCAAATATTCAGATGATGACGTTGTATTA
ACTAAAGACGATTTTTATAAATTTGTTCATATTCATGGTTATCATTATAAAGAAGGATTT
CAATTAGTTCATGAAATAACTAACACTGGATTAAAAGGCAAAATTAAATGGAACAACAAT
TGGGCAACTTTTGCTGATACACTTTTTCAAATGTTACTAATTAAAATGACTTCATTAAAT
CAAATTGGATTGCCGAGAAAAATTGAGAAAATTTCTTTTGATCCAATTCTTCATAATAAA
ATTCTTGAACGAGCAAAATTGAATAATAAACAAAACAATCAGTCAGAAATTCTTTTACCT
ATTGAAGGACGTTATGATTTAGGCACAATAAGATGTGGTGGTGTTGAAATGTATGAACCT
TTACCAATTGCTATTAACAGACAAGAACAAAAAAATTTAACTCATGAATTTTATAAATTT
ATTTCATTTGAAAATGATGAACGAAAATTTGAATTTTCGGATGCTTTAAAGATTTTTTCT
ACGACTATAATTGACAGAAATCCCAAACAAACATACAATCTAATAGAAATAAATGATGAA
AGTTCTGATTTTTGGGCTCCTATGCTTGAAATCAACAGTCGGTCAATGCAAAATGTTTTA
AATATTAAAGTCTTAACAAAAACAGACCAAAAAATCAATAATGTAGAAGTTATTACTGAT
AAAGATATTTCAATATTCAACAATATTGACGCTATTTATGCCAGATATAAATTGAATGAA
TTTGAATTCATAAATAAAATTTCAAAAGTGTTGTGTAAAGATGGCATTTTAATAACACTT
GAAGAATCAAAAGTTGAAAAATGTAATGAAAAAATTGAAATTTTATCAAAATTGACTTTA
AAAAGTAATCAGAGTTTAATTATGGCAAGAATGAAAACAGAAGAAATTCTATTGAAACCA
GTGATATTCAAAATTACTTCAAATTTGCCAGAATGGTTCGAAAATTTGAAACAAAATATT
TTAAATTTTTCGAAAAATTCTAATCAGACAGTTTTGCTTTATTCACAAGAACCATATGTT
GGACTTCTTGGATTTTATAATTGTTTACGTTTAGAATTTCCAGAAATCAATATTTCATGT
TTCATTATTGATGACACAAATGCACCAGAATTTGACATTGAAAATTCGTTTTATAAGAAA
CAATTTTTGAGAGGTTTTAAAAAGAACATTTTGAAAAATAATCAATGGGGAACGTTTTAT
CATCTGAATATGAATATAACATGTGAACCTGTGTCATATAAAGAGCAATGCTTTGCAAAT
TATAGCAGAAGAGGCAATCTTAATACTATTAAGTGGCATCAAGGACCAATGACTGTTTTG
GATAATCCACAAAACAATTGTGATTTGATTAAAGTACAATATGTTGCACTTAATTTTAAA
GACATTGTTTATGCTTTTGGTTACATACCTGATGGAGTAAATCTCATAAAAGAATGTTCA
TTAGGACTAGAATTTGGAGGTATTCGAGTTAAAACTGGTGAAAGAGTTTTTGTACTAACA
AGAAATACTGCTGGAATAACTTCTTACTTTGATACAAGTGATAAAGAAAATACAATTGTT
AAAAAAATTGATGATGAATTAGAACTAATTGATATGACTTCATCATTACTTGTTTATTTT
ACTGTTTATTATTCATTTTTTTATACAACAAAAATAGAAAAAGGTAAATCAATTTTGATT
CATAGTGGAGCAGGTGGCGTTGGTCAGGCAGCTCTTCATACTGCATTTAATAACGATTTG
GAAGTTTTTGTCACTGTCGGGACTGAAGAAAAGAGAAAATTTTTACTTGAAAATTTTTCT
AAATTGAAGCCTGAAAATATTGGAAATTCTCGTGACACATCCTTTTACAAAATGGTTATG
ACACAAACTAATGGGCGAGGTGTTGACTATGTTTTGAATTCTCTAAGTGGTGATAAAATG
ATTGCATCATTAGATTGTGTTGCAAAAAATGGATGTTTTTTGGAAATTGGTCAAGCTGAT
ATAATGTTGGGAACACAAATCAGTTTGAAATTTTTGGAAAGAAATATTTCAATAAAATCA
GTTAGAGCAGATTTGATAGATTTTTCAATAATACCTGAAAAAATTTTTTCTGATATCCTT
GAAGATTTTAAAAAAGGAAAAATTAAACCGCCAAGCAGAACTGTTTTTGATGCAAATGAT
GTTGTTAAAGCATTCCAACATATGTCTACTGGTAATCATATCGGTAAAATAATATTGAAG
ATTCGTGAGAATTTGAATGATGAAGAAACTTTGCCTATTTCTGTGACGCCTCGTTTCTAT
TGCAATCCTGAGCGATCTTACATAATTGTTGGCGGACTTAATGGACTTGGCTTTGAATTT
TCTGAATGGCTTGTTGGACGAAAATGTCGTAAAATTATTTTTAACTCAAGAAGAGGCATA
ACTAATCAATATCAGATTTTCAAAATAAATTATTGGAAATCTTTTGGTGTGGAAGTTATT
GTCAACACATCTGATGCCACAACTGAAGCAGGATGTAAAGAATTAATCAAAATAGCGAAT
GACCATGGTGTTGTTGATGGAATTTTCAATTTTGCTGCAATTATCAAAGATGGATTTTTT
TCAAATCAGACATTAGAAGCTTTCAATCAAACTCTTGCTCCAAAAGCAATTATAACCAAA
TATCTACATGAATTATCACTTAAACTTTGTCCACAATTGAAACATTTTATCGTTTATTCA
AGTGTTTCTTGTGGTATTGGAATGCCTGGACAAACAAATTATGGAATGGCAAACTCTATA
ATGGAAGAAATCATACTTAAACGATATGAAATGGGACTTCCAGCAAAAGCATTGCAGTGG
GGAGCAATTGCGGATGTTGGTATCCTCGCAAATATGGGAAATGCAGAAGGAACTAAATAT
AATTTTAAATTTTCGGTTCAGTCTCTTGCTTCTTTCTTAGAATGTCATGATCTTCTTTTA
TTACATCCAGAACCAATTGTTACTTGTGCAACCTTTAATCAACATAAAAGCTTAAAAGAA
GGCAAACAAAGATTTACTGAAGTCTTGATGGATTTTTTTAACATTGAAGATCGTTCATCT
TTCTCTTTGAACTCAACATTCTCTCAGCTTGGCGTAGATTCATTAGGTGGAATAGAAATA
CAAAATATGATAGAAAGAGAATTTGGTGTTAGTTTTACAGTCCAAGAACTAAGGAGTATG
ACATTAGGAGAAATTGATGAAAAAATTGAAAAGAAAAGAAATGATTAA
>g8552.t1 Gene=g8552 Length=2055
MSEKSDDVVISGIAGRFPKSRNLKEFSENLFKKVDMTDDSEVLWKHILENIPKRSGKITD
LDKFDAKFFSMMNNQANLTDPQLRILFEHVYEAILDAGISPQSLIESNTGVIIGCSMSES
MFTYTKGSSVAESGAATYNNGPFFLASKISYTFGFRGPALIIDTACSSAASALNCALKYI
KQNECDAAIVAGSHLNLGPRMFIEFSGLGALTPDGISKVFDEDSKGFVRSDAIAAVFLQK
RKDAKRIYAQLVHSLSNNDGFKHEGILLPSKEVQQLLMERLYKEVNIDPSEINYFEAHAT
GTKLGDFQEIGAVDEVFCKKNRQNNLIVGSVKSNLGHAEAASAMPSLAKILIAFESGKIP
PNINLNKLREDIPAFAEGRIEVATDAVPLTSEYISMNSFGFGGYNVHLLFKRNSKQKIIT
NIGNIERMVLWSGRTEDAVHAIFDDIISRPLDIEYIALLQNTQTITPNLNCYRGFGIFKN
NEENTICIERNVQSFDGIRRQIVFSYAGMGSQWHKMGQDLMAIELFTESIEKCHEILLEN
QINLKSILNSNDEKIYENVLNAYVGIISIQIALTDVLYALNVKPDWIVGHSVGEIACAYA
DGCLTMKEALNIAYLRAKLTLDLNINGGAMAVVGMSSEELEKILSYDIDIACYNAKELIT
ISGNKKVISEFVDQLKSQNIFAKEIECAGVPFHSRHMTVMAKKFEEKLQDLLKTPKMRSN
KWITSTYNEENEQNKICNIKYQTDNVTNSVYFDKAIENLPKNSLIIEISPHGLLKTFFKL
SSNESIYERLMNKNSKNHKDFFMQSLGKIFQHGVDLDISKLYPAIKFPVSRGTSMISPLI
KWNHEHNYFVPMFDHDFEFSRFSKIFNFNSPEYSYVYDHVIDGKAIIPAMFWIHSIWKYF
AAFCERKWYETKITLTKVECVQLAYPDKEVKITLLMNRKTGNVEIYCGNNLIMKAIAKCD
DNVQIDEIEDSKYSDDDVVLTKDDFYKFVHIHGYHYKEGFQLVHEITNTGLKGKIKWNNN
WATFADTLFQMLLIKMTSLNQIGLPRKIEKISFDPILHNKILERAKLNNKQNNQSEILLP
IEGRYDLGTIRCGGVEMYEPLPIAINRQEQKNLTHEFYKFISFENDERKFEFSDALKIFS
TTIIDRNPKQTYNLIEINDESSDFWAPMLEINSRSMQNVLNIKVLTKTDQKINNVEVITD
KDISIFNNIDAIYARYKLNEFEFINKISKVLCKDGILITLEESKVEKCNEKIEILSKLTL
KSNQSLIMARMKTEEILLKPVIFKITSNLPEWFENLKQNILNFSKNSNQTVLLYSQEPYV
GLLGFYNCLRLEFPEINISCFIIDDTNAPEFDIENSFYKKQFLRGFKKNILKNNQWGTFY
HLNMNITCEPVSYKEQCFANYSRRGNLNTIKWHQGPMTVLDNPQNNCDLIKVQYVALNFK
DIVYAFGYIPDGVNLIKECSLGLEFGGIRVKTGERVFVLTRNTAGITSYFDTSDKENTIV
KKIDDELELIDMTSSLLVYFTVYYSFFYTTKIEKGKSILIHSGAGGVGQAALHTAFNNDL
EVFVTVGTEEKRKFLLENFSKLKPENIGNSRDTSFYKMVMTQTNGRGVDYVLNSLSGDKM
IASLDCVAKNGCFLEIGQADIMLGTQISLKFLERNISIKSVRADLIDFSIIPEKIFSDIL
EDFKKGKIKPPSRTVFDANDVVKAFQHMSTGNHIGKIILKIRENLNDEETLPISVTPRFY
CNPERSYIIVGGLNGLGFEFSEWLVGRKCRKIIFNSRRGITNQYQIFKINYWKSFGVEVI
VNTSDATTEAGCKELIKIANDHGVVDGIFNFAAIIKDGFFSNQTLEAFNQTLAPKAIITK
YLHELSLKLCPQLKHFIVYSSVSCGIGMPGQTNYGMANSIMEEIILKRYEMGLPAKALQW
GAIADVGILANMGNAEGTKYNFKFSVQSLASFLECHDLLLLHPEPIVTCATFNQHKSLKE
GKQRFTEVLMDFFNIEDRSSFSLNSTFSQLGVDSLGGIEIQNMIEREFGVSFTVQELRSM
TLGEIDEKIEKKRND
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 26 | g8552.t1 | CDD | cd00833 | PKS | 6 | 409 | 3.62097E-134 |
| 27 | g8552.t1 | CDD | cd05195 | enoyl_red | 1430 | 1719 | 7.1677E-85 |
| 25 | g8552.t1 | Coils | Coil | Coil | 2042 | 2055 | - |
| 21 | g8552.t1 | Gene3D | G3DSA:3.40.47.10 | - | 5 | 412 | 4.0E-125 |
| 19 | g8552.t1 | Gene3D | G3DSA:3.30.70.3290 | - | 426 | 849 | 1.5E-143 |
| 24 | g8552.t1 | Gene3D | G3DSA:3.40.366.10 | - | 498 | 813 | 1.5E-143 |
| 20 | g8552.t1 | Gene3D | G3DSA:3.10.129.110 | - | 863 | 1111 | 3.8E-37 |
| 18 | g8552.t1 | Gene3D | G3DSA:3.40.50.720 | - | 1291 | 1969 | 1.3E-200 |
| 23 | g8552.t1 | Gene3D | G3DSA:3.90.180.10 | - | 1386 | 1739 | 1.3E-200 |
| 22 | g8552.t1 | Gene3D | G3DSA:1.10.1200.10 | - | 1978 | 2055 | 3.7E-13 |
| 9 | g8552.t1 | PANTHER | PTHR43775 | FATTY ACID SYNTHASE | 4 | 2052 | 0.0 |
| 10 | g8552.t1 | PANTHER | PTHR43775:SF23 | FATTY ACID SYNTHASE 3 | 4 | 2052 | 0.0 |
| 4 | g8552.t1 | Pfam | PF00109 | Beta-ketoacyl synthase, N-terminal domain | 6 | 244 | 6.7E-55 |
| 1 | g8552.t1 | Pfam | PF02801 | Beta-ketoacyl synthase, C-terminal domain | 248 | 365 | 4.8E-33 |
| 8 | g8552.t1 | Pfam | PF16197 | Ketoacyl-synthetase C-terminal extension | 370 | 477 | 9.8E-24 |
| 6 | g8552.t1 | Pfam | PF00698 | Acyl transferase domain | 503 | 803 | 5.0E-54 |
| 3 | g8552.t1 | Pfam | PF14765 | Polyketide synthase dehydratase | 872 | 1055 | 9.5E-7 |
| 7 | g8552.t1 | Pfam | PF13602 | Zinc-binding dehydrogenase | 1591 | 1719 | 2.6E-14 |
| 2 | g8552.t1 | Pfam | PF08659 | KR domain | 1746 | 1924 | 3.9E-36 |
| 5 | g8552.t1 | Pfam | PF00550 | Phosphopantetheine attachment site | 1987 | 2044 | 1.4E-8 |
| 28 | g8552.t1 | ProSitePatterns | PS00606 | Beta-ketoacyl synthases active site. | 157 | 173 | - |
| 34 | g8552.t1 | ProSiteProfiles | PS50075 | Carrier protein (CP) domain profile. | 1979 | 2055 | 10.335 |
| 32 | g8552.t1 | SMART | SM00825 | Beta-ketoacyl synthase | 8 | 413 | 3.8E-86 |
| 30 | g8552.t1 | SMART | SM00827 | Acyl transferase domain in polyketide synthase (PKS) enzymes. | 505 | 795 | 7.6E-22 |
| 29 | g8552.t1 | SMART | SM00829 | PKS_ER_names_mod | 1405 | 1719 | 1.0E-81 |
| 33 | g8552.t1 | SMART | SM00822 | This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. | 1745 | 1926 | 1.6E-13 |
| 31 | g8552.t1 | SMART | SM00823 | Phosphopantetheine attachment site | 1982 | 2037 | 0.004 |
| 12 | g8552.t1 | SUPERFAMILY | SSF53901 | Thiolase-like | 5 | 411 | 3.27E-60 |
| 11 | g8552.t1 | SUPERFAMILY | SSF52151 | FabD/lysophospholipase-like | 502 | 779 | 3.66E-39 |
| 17 | g8552.t1 | SUPERFAMILY | SSF55048 | Probable ACP-binding domain of malonyl-CoA ACP transacylase | 626 | 683 | 3.01E-7 |
| 15 | g8552.t1 | SUPERFAMILY | SSF50129 | GroES-like | 1421 | 1541 | 9.95E-8 |
| 14 | g8552.t1 | SUPERFAMILY | SSF51735 | NAD(P)-binding Rossmann-fold domains | 1514 | 1661 | 9.87E-29 |
| 13 | g8552.t1 | SUPERFAMILY | SSF51735 | NAD(P)-binding Rossmann-fold domains | 1744 | 1966 | 9.49E-27 |
| 16 | g8552.t1 | SUPERFAMILY | SSF47336 | ACP-like | 1983 | 2050 | 3.66E-9 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0031177 | phosphopantetheine binding | MF |
| GO:0016746 | acyltransferase activity | MF |
| GO:0004315 | 3-oxoacyl-[acyl-carrier-protein] synthase activity | MF |
| GO:0016740 | transferase activity | MF |
| GO:0006633 | fatty acid biosynthetic process | BP |
| GO:0016491 | oxidoreductase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed