General information for g8575.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Coiled-coil domain-containing protein 6.
Parent gene
- The parent gene g8575 is located on chr_2: 31404335..31404878 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8575 | g8575.t4 | TTS | g8575.t4 | 31402578 | 31402578 |
| chr_2 | g8575 | g8575.t4 | isoform | g8575.t4 | 31403543 | 31404878 |
| chr_2 | g8575 | g8575.t4 | exon | g8575.t4.exon1 | 31403543 | 31403551 |
| chr_2 | g8575 | g8575.t4 | cds | g8575.t4.CDS1 | 31403545 | 31403551 |
| chr_2 | g8575 | g8575.t4 | exon | g8575.t4.exon2 | 31403620 | 31404363 |
| chr_2 | g8575 | g8575.t4 | cds | g8575.t4.CDS2 | 31403620 | 31404335 |
| chr_2 | g8575 | g8575.t4 | exon | g8575.t4.exon3 | 31404745 | 31404878 |
| chr_2 | g8575 | g8575.t4 | TSS | g8575.t4 | 31404874 | 31404874 |
Sequences
>g8575.t4 Gene=g8575 Length=887
GTCGAAAAATACATTGTTGTTTGTGTGAATTAAAATACACATTTTAGTTAATAAATCAAC
GTAATTCTTACTAATTATAAATTATTTAAGTTTCAAAAAGTGTTTAAATTAACCACACTA
TCGATTGATTAAAGGAATAAAGTGTAAACGTTTGTGTATAAGATGGACAGCTCGATATCG
TGTGAATCGGAATCATTGGATGGATTTAGTTCCATGGCACCTCCCTCGCCTGTTTCTCGT
GAACAATTACAAAAGCGAATAGATAGTCTTAATCAACAGAATAAAGTGTTAAAGGTAGAA
TTGGATACGTATAAAATTCGTGTTAAACAATTACAAGAAGAAAATAAATCGCTTCGGCAA
GCATCTGTGAATATTCAAGCAAAAGCAGAACAGGAAGAAGAATATATTTCTAATACATTG
TTGAAAAAAATTCAAGCACTAAAAAAAGAGAAGGAAACACTAGCACATCATTATGAACGC
GAAGAAGAATGTTTGACTAATGATTTATCGCGTAAATTAGATCAGTTACGTCAAGAGAAA
TGTAAGCTCGAATTAACATTAGAACAGGAGCAGGAATGCTTAGTTAATAAGCTAATGCGT
AAGATTGAGAAGCTTGAAGCTGAAACAATAGCAAAGCAAACGAATCTTGAACAATTAAGG
CGTGAAATGGTCGAGTTGGAAAATACACTCGAGCAAGAGCAAGAGGCGCTAGTCAATAAA
TTATGGAAACGCATGGATAAATTGGAGGCTGAAAAAAGATCGCTTCAAATTCGTTTAGAT
CAACCAACAGAGTCAACACATATAATTCAACAACAAATTCAAAATAATCCAAATAGTGAT
GAAGTTAGTGTTCTTACTTCTCATATTCAAACATTACGATCTGAGGT
>g8575.t4 Gene=g8575 Length=241
MDSSISCESESLDGFSSMAPPSPVSREQLQKRIDSLNQQNKVLKVELDTYKIRVKQLQEE
NKSLRQASVNIQAKAEQEEEYISNTLLKKIQALKKEKETLAHHYEREEECLTNDLSRKLD
QLRQEKCKLELTLEQEQECLVNKLMRKIEKLEAETIAKQTNLEQLRREMVELENTLEQEQ
EALVNKLWKRMDKLEAEKRSLQIRLDQPTESTHIIQQQIQNNPNSDEVSVLTSHIQTLRS
E
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g8575.t4 | Coils | Coil | Coil | 26 | 77 | - |
| 4 | g8575.t4 | Coils | Coil | Coil | 87 | 125 | - |
| 5 | g8575.t4 | Coils | Coil | Coil | 134 | 204 | - |
| 3 | g8575.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 28 | - |
| 2 | g8575.t4 | PANTHER | PTHR15276 | H4 D10S170 PROTEIN-RELATED | 1 | 241 | 7.9E-94 |
| 1 | g8575.t4 | Pfam | PF09755 | Uncharacterized conserved protein H4 (DUF2046) | 7 | 241 | 1.3E-108 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
