General information for g8635.t12
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Sulfide:quinone oxidoreductase, mitochondrial.
Parent gene
- The parent gene g8635 is located on chr_2: 31953556..31954204 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8635 | g8635.t12 | TTS | g8635.t12 | 31952126 | 31952126 |
| chr_2 | g8635 | g8635.t12 | isoform | g8635.t12 | 31952794 | 31953888 |
| chr_2 | g8635 | g8635.t12 | exon | g8635.t12.exon1 | 31952794 | 31952819 |
| chr_2 | g8635 | g8635.t12 | cds | g8635.t12.CDS1 | 31952796 | 31952819 |
| chr_2 | g8635 | g8635.t12 | exon | g8635.t12.exon2 | 31952878 | 31953131 |
| chr_2 | g8635 | g8635.t12 | cds | g8635.t12.CDS2 | 31952878 | 31953131 |
| chr_2 | g8635 | g8635.t12 | exon | g8635.t12.exon3 | 31953191 | 31953888 |
| chr_2 | g8635 | g8635.t12 | cds | g8635.t12.CDS3 | 31953191 | 31953527 |
| chr_2 | g8635 | g8635.t12 | TSS | g8635.t12 | 31954203 | 31954203 |
Sequences
>g8635.t12 Gene=g8635 Length=978
ATGAATACAATCAAATGTCTAAGCAATTTAAGAAGTGGTTCAGTTCTTGCAAGAAATTTT
TCAACATCTAATTTAAATTTCGCAAATCATAAGTATGATTACGTCTTGTTGTTGCGAAAA
GATCATGTGAAAGATAAATTCTTATTTATTTTTAGATGTCGCGTGTTAGTGGTTGGTGGA
GGATGCGGTGGAACAGCTGTTGCTGCAAAACTTGCTTATCGACTTGGAGCTGGACAAGTT
ACAGTTCTTGAATCCTCTGATGTATTTCAATTACACTCATTAAAAGAATTTATTTAATGA
TTCTGTTAAAAAATTTTAGAAACATTATTATCAACCACTCTTCACTCTAATTGGTGGCGG
CATGAAAAAACTTGAAGATTCCTATCGACCTATGAAAGATACTCTTTCATGTCTTACAAC
TTGGGTTAAAGATCGTGCAGCTAAATTCAATCCAACGACAAATACTGTTGAAACTGAAAA
TGGAGACACAATCGAATATGATTATTTAGTTGTTGCAACAGGAATTGAAGTTAATTATGA
AGCCATTCCAGGATTAGTTGATGCTTTGAAAGTCCCTAAAGGGCCAGTTTGTTCAATTTA
TTCTCCACTATATGTCAATCGTGTGTATGACGCTTTCCAAAGTTTCAAAGGTGGAAATGC
TATTTTCACTTTTCCTGCATCACCAGTTAAATGTCCAGGTGCTCCTCAGAAAATTTTATA
CATTTTTGAACATTATACACGAAAGAATAAGAAAAGAAATGCAGCTAAACTTTATTACAA
CACTTCTTTGCCAGTAATTTTTGGTGTTAAACATTATGCTGATGCATTGTGGAAAGTTGT
TGAGAAACGTGATATTAATGTCAATTTACGTACAAATCTTGTTGAAGTTCTTCCAAATGG
AAGAGAAGCAGTTTTCGAAAACTTGGATACAAAAGAGAGAAAGATAATGGATTTTAATCT
TCTTCATGTGACACCACC
>g8635.t12 Gene=g8635 Length=205
MKKLEDSYRPMKDTLSCLTTWVKDRAAKFNPTTNTVETENGDTIEYDYLVVATGIEVNYE
AIPGLVDALKVPKGPVCSIYSPLYVNRVYDAFQSFKGGNAIFTFPASPVKCPGAPQKILY
IFEHYTRKNKKRNAAKLYYNTSLPVIFGVKHYADALWKVVEKRDINVNLRTNLVEVLPNG
REAVFENLDTKERKIMDFNLLHVTP
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g8635.t12 | Gene3D | G3DSA:3.50.50.100 | - | 1 | 205 | 0 |
| 1 | g8635.t12 | PANTHER | PTHR10632 | SULFIDE:QUINONE OXIDOREDUCTASE | 1 | 205 | 0 |
| 2 | g8635.t12 | SUPERFAMILY | SSF51905 | FAD/NAD(P)-binding domain | 14 | 99 | 0 |
| 3 | g8635.t12 | SUPERFAMILY | SSF51905 | FAD/NAD(P)-binding domain | 75 | 205 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
