Gene loci information

Transcript annotation

  • This transcript has been annotated as Sulfide:quinone oxidoreductase, mitochondrial.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g8635 g8635.t14 TTS g8635.t14 31952126 31952126
chr_2 g8635 g8635.t14 isoform g8635.t14 31952794 31954204
chr_2 g8635 g8635.t14 exon g8635.t14.exon1 31952794 31952819
chr_2 g8635 g8635.t14 cds g8635.t14.CDS1 31952796 31952819
chr_2 g8635 g8635.t14 exon g8635.t14.exon2 31952878 31953131
chr_2 g8635 g8635.t14 cds g8635.t14.CDS2 31952878 31953131
chr_2 g8635 g8635.t14 exon g8635.t14.exon3 31953191 31953569
chr_2 g8635 g8635.t14 cds g8635.t14.CDS3 31953191 31953569
chr_2 g8635 g8635.t14 exon g8635.t14.exon4 31953628 31953733
chr_2 g8635 g8635.t14 cds g8635.t14.CDS4 31953628 31953733
chr_2 g8635 g8635.t14 exon g8635.t14.exon5 31953797 31953985
chr_2 g8635 g8635.t14 cds g8635.t14.CDS5 31953797 31953888
chr_2 g8635 g8635.t14 exon g8635.t14.exon6 31954143 31954204
chr_2 g8635 g8635.t14 TSS g8635.t14 31954203 31954203

Sequences

>g8635.t14 Gene=g8635 Length=1016
CAGTCTAATTATTTTGCTAAAAAGTGTTACATTTTCTTCCTTATAGCTATAAGATTTAAT
TGTGACAACGTTCTTTAAGGTGTTCAAAATAATTTCGGCAATCATCAAATATTTTGTGAC
ATATCCATTGACTTAAAACGCTTATCAATTTTCTTGATAATGAATACAATCAAATGTCTA
AGCAATTTAAGAAGTGGTTCAGTTCTTGCAAGAAATTTTTCAACATCTAATTTAAATTTC
GCAAATCATAAATGTCGCGTGTTAGTGGTTGGTGGAGGATGCGGTGGAACAGCTGTTGCT
GCAAAACTTGCTTATCGACTTGGAGCTGGACAAGTTACAGTTCTTGAATCCTCTGATAAA
CATTATTATCAACCACTCTTCACTCTAATTGGTGGCGGCATGAAAAAACTTGAAGATTCC
TATCGACCTATGAAAGATACTCTTTCATGTCTTACAACTTGGGTTAAAGATCGTGCAGCT
AAATTCAATCCAACGACAAATACTGTTGAAACTGAAAATGGAGACACAATCGAATATGAT
TATTTAGTTGTTGCAACAGGAATTGAAGTTAATTATGAAGCCATTCCAGGATTAGTTGAT
GCTTTGAAAGTCCCTAAAGGGCCAGTTTGTTCAATTTATTCTCCACTATATGTCAATCGT
GTGTATGACGCTTTCCAAAGTTTCAAAGGTGGAAATGCTATTTTCACTTTTCCTGCATCA
CCAGTTAAATGTCCAGGTGCTCCTCAGAAAATTTTATACATTTTTGAACATTATACACGA
AAGAATAAGAAAAGAAATGCAGCTAAACTTTATTACAACACTTCTTTGCCAGTAATTTTT
GGTGTTAAACATTATGCTGATGCATTGTGGAAAGTTGTTGAGAAACGTGATATTAATGTC
AATTTACGTACAAATCTTGTTGAAGTTCTTCCAAATGGAAGAGAAGCAGTTTTCGAAAAC
TTGGATACAAAAGAGAGAAAGATAATGGATTTTAATCTTCTTCATGTGACACCACC

>g8635.t14 Gene=g8635 Length=285
MNTIKCLSNLRSGSVLARNFSTSNLNFANHKCRVLVVGGGCGGTAVAAKLAYRLGAGQVT
VLESSDKHYYQPLFTLIGGGMKKLEDSYRPMKDTLSCLTTWVKDRAAKFNPTTNTVETEN
GDTIEYDYLVVATGIEVNYEAIPGLVDALKVPKGPVCSIYSPLYVNRVYDAFQSFKGGNA
IFTFPASPVKCPGAPQKILYIFEHYTRKNKKRNAAKLYYNTSLPVIFGVKHYADALWKVV
EKRDINVNLRTNLVEVLPNGREAVFENLDTKERKIMDFNLLHVTP

Protein features from InterProScan

Transcript Database ID Name Start End E.value
5 g8635.t14 Gene3D G3DSA:3.50.50.100 - 29 285 0
2 g8635.t14 PANTHER PTHR10632 SULFIDE:QUINONE OXIDOREDUCTASE 6 285 0
1 g8635.t14 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 33 145 0
4 g8635.t14 SUPERFAMILY SSF51905 FAD/NAD(P)-binding domain 31 179 0
3 g8635.t14 SUPERFAMILY SSF51905 FAD/NAD(P)-binding domain 155 285 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0055114 NA NA
GO:0016491 oxidoreductase activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values