General information for g8635.t17
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Sulfide:quinone oxidoreductase, mitochondrial.
Parent gene
- The parent gene g8635 is located on chr_2: 31953556..31954204 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8635 | g8635.t17 | TTS | g8635.t17 | 31952126 | 31952126 |
| chr_2 | g8635 | g8635.t17 | isoform | g8635.t17 | 31953123 | 31954204 |
| chr_2 | g8635 | g8635.t17 | exon | g8635.t17.exon1 | 31953123 | 31953131 |
| chr_2 | g8635 | g8635.t17 | cds | g8635.t17.CDS1 | 31953124 | 31953131 |
| chr_2 | g8635 | g8635.t17 | exon | g8635.t17.exon2 | 31953197 | 31953569 |
| chr_2 | g8635 | g8635.t17 | cds | g8635.t17.CDS2 | 31953197 | 31953569 |
| chr_2 | g8635 | g8635.t17 | exon | g8635.t17.exon3 | 31953628 | 31953733 |
| chr_2 | g8635 | g8635.t17 | cds | g8635.t17.CDS3 | 31953628 | 31953733 |
| chr_2 | g8635 | g8635.t17 | exon | g8635.t17.exon4 | 31953797 | 31953985 |
| chr_2 | g8635 | g8635.t17 | cds | g8635.t17.CDS4 | 31953797 | 31953888 |
| chr_2 | g8635 | g8635.t17 | exon | g8635.t17.exon5 | 31954143 | 31954204 |
| chr_2 | g8635 | g8635.t17 | TSS | g8635.t17 | 31954203 | 31954203 |
Sequences
>g8635.t17 Gene=g8635 Length=739
CAGTCTAATTATTTTGCTAAAAAGTGTTACATTTTCTTCCTTATAGCTATAAGATTTAAT
TGTGACAACGTTCTTTAAGGTGTTCAAAATAATTTCGGCAATCATCAAATATTTTGTGAC
ATATCCATTGACTTAAAACGCTTATCAATTTTCTTGATAATGAATACAATCAAATGTCTA
AGCAATTTAAGAAGTGGTTCAGTTCTTGCAAGAAATTTTTCAACATCTAATTTAAATTTC
GCAAATCATAAATGTCGCGTGTTAGTGGTTGGTGGAGGATGCGGTGGAACAGCTGTTGCT
GCAAAACTTGCTTATCGACTTGGAGCTGGACAAGTTACAGTTCTTGAATCCTCTGATAAA
CATTATTATCAACCACTCTTCACTCTAATTGGTGGCGGCATGAAAAAACTTGAAGATTCC
TATCGACCTATGAAAGATACTCTTTCATGTCTTACAACTTGGGTTAAAGATCGTGCAGCT
AAATTCAATCCAACGACAAATACTGTTGAAACTGAAAATGGAGACACAATCGAATATGAT
TATTTAGTTGTTGCAACAGGAATTGAAGTTAATTATGAAGCCATTCCAGGATTAGTTGAT
GCTTTGAAAGTCCCTAAAGGGCCAGTTTGTTCAATTTATTCTCCACTATATGTCAATCGT
GTGTATGACGCTTTCCAAAGTTTCAAAGGTGGAAATGCTATTTTCACTTTTCCTGCATCA
CCAGTTAAATGTGCTCCTC
>g8635.t17 Gene=g8635 Length=193
MNTIKCLSNLRSGSVLARNFSTSNLNFANHKCRVLVVGGGCGGTAVAAKLAYRLGAGQVT
VLESSDKHYYQPLFTLIGGGMKKLEDSYRPMKDTLSCLTTWVKDRAAKFNPTTNTVETEN
GDTIEYDYLVVATGIEVNYEAIPGLVDALKVPKGPVCSIYSPLYVNRVYDAFQSFKGGNA
IFTFPASPVKCAP
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g8635.t17 | Gene3D | G3DSA:3.50.50.100 | - | 29 | 193 | 0 |
| 2 | g8635.t17 | PANTHER | PTHR10632 | SULFIDE:QUINONE OXIDOREDUCTASE | 6 | 192 | 0 |
| 1 | g8635.t17 | Pfam | PF07992 | Pyridine nucleotide-disulphide oxidoreductase | 33 | 145 | 0 |
| 3 | g8635.t17 | SUPERFAMILY | SSF51905 | FAD/NAD(P)-binding domain | 31 | 179 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0055114 | NA | NA |
| GO:0016491 | oxidoreductase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
