Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Protein max.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g8669 g8669.t19 isoform g8669.t19 32168814 32170065
chr_2 g8669 g8669.t19 exon g8669.t19.exon1 32168814 32169512
chr_2 g8669 g8669.t19 TTS g8669.t19 32168821 32168821
chr_2 g8669 g8669.t19 cds g8669.t19.CDS1 32169222 32169512
chr_2 g8669 g8669.t19 exon g8669.t19.exon2 32169585 32169650
chr_2 g8669 g8669.t19 cds g8669.t19.CDS2 32169585 32169650
chr_2 g8669 g8669.t19 exon g8669.t19.exon3 32169716 32169770
chr_2 g8669 g8669.t19 cds g8669.t19.CDS3 32169716 32169770
chr_2 g8669 g8669.t19 exon g8669.t19.exon4 32169843 32169899
chr_2 g8669 g8669.t19 cds g8669.t19.CDS4 32169843 32169868
chr_2 g8669 g8669.t19 exon g8669.t19.exon5 32170000 32170065
chr_2 g8669 g8669.t19 TSS g8669.t19 32170144 32170144

Sequences

>g8669.t19 Gene=g8669 Length=943
ATGAAATATTACGAAGAAAACAGTGCTGCGATGAGTGAAGATGAGAATCTTGATGTCGAA
AGTGACGAAGAAGAATCAAGCGATAATAAATCCCGAAATGCAAACAATCAATATTTCTCG
CAAATTACAGGCTGAAAAGCGTGCACATCACAATGCTCTGGAGAGAAAAAGAAGAGATCA
CATAAAAGATAGTTTCACATCTTTACGTGATTCTGTTCCTTCACTTCAAGGCGAGAAGGT
ACATGCAAGTCGTGCACAGATACTAAAGAAAGCGGCCGAATATATACAATTTATGCGACG
CAAAAACAATTCACATCAACAGGACATTGATGATTTAAAACGTCAAAATTCAATGCTTGA
AGCGCAAATTCGATCACTTGAGCGAGCAAGACAAACTGGAAATTTTGGTGGTGGTGAGAG
TGGAAACGAAGTTGCAATGGAAAGTGTTAAATCAGACGTAAGCTCGCATGAGAGTTCAGA
TGAAAATGACGAAAATGAACGCAGAAATAAGCGTTTTAAGACAACTACTTATTAAATGTG
ATTTTCTTATAACTCTCTCATCCTCCTCCGAAATGATGCAGTTCAATTGCTTTTTATATA
TGATGATAACGACAAATGGCAAAGAGAAATATTGGAGACTCACATGCTACTTTATTATTA
AGAGTAGTCAATGAGCCGTATGAAAATATTATTTTAAGACATTAATGCTTGATAAAAAAA
ATGTTTTATTTTAGTTGCTATTCTCATTATTTTGAGTTAAAATCCCAAAAAATATTAGTT
TCTTTCCTCAATCATGCTTTTTTTTATTGTAATTAAAAATCAAAAAGTTTTGCAAATGTA
AAAAGTTTCATGAAAGTGGTATGTTGCGAAACTACAATGTTTGAAGAAAAGTTTTTTTTT
AGAAGATTAAGACAAATAAAGATTTAAATTGTAATCAAAATAT

>g8669.t19 Gene=g8669 Length=145
MQTINISRKLQAEKRAHHNALERKRRDHIKDSFTSLRDSVPSLQGEKVHASRAQILKKAA
EYIQFMRRKNNSHQQDIDDLKRQNSMLEAQIRSLERARQTGNFGGGESGNEVAMESVKSD
VSSHESSDENDENERRNKRFKTTTY

Protein features from InterProScan

Transcript Database ID Name Start End E.value
10 g8669.t19 CDD cd11406 bHLHzip_Max 14 84 1.33129E-39
9 g8669.t19 Coils Coil Coil 63 100 -
8 g8669.t19 Gene3D G3DSA:4.10.280.10 HLH 14 94 5.5E-30
12 g8669.t19 MobiDBLite mobidb-lite consensus disorder prediction 96 145 -
13 g8669.t19 MobiDBLite mobidb-lite consensus disorder prediction 121 145 -
2 g8669.t19 PANTHER PTHR10328 PROTEIN MAX MYC-ASSOCIATED FACTOR X 8 139 6.1E-43
3 g8669.t19 PANTHER PTHR10328:SF3 PROTEIN MAX 8 139 6.1E-43
6 g8669.t19 PRINTS PR00044 Myc proto-oncogene signature 6 22 1.7E-8
5 g8669.t19 PRINTS PR00044 Myc proto-oncogene signature 23 38 1.7E-8
4 g8669.t19 PRINTS PR00044 Myc proto-oncogene signature 49 62 1.7E-8
1 g8669.t19 Pfam PF00010 Helix-loop-helix DNA-binding domain 14 66 8.6E-16
14 g8669.t19 ProSiteProfiles PS50888 Myc-type, basic helix-loop-helix (bHLH) domain profile. 13 66 15.529
11 g8669.t19 SMART SM00353 finulus 19 72 1.6E-14
7 g8669.t19 SUPERFAMILY SSF47459 HLH, helix-loop-helix DNA-binding domain 12 93 1.31E-18

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0090575 RNA polymerase II transcription regulator complex CC
GO:0071339 MLL1 complex CC
GO:0006355 regulation of transcription, DNA-templated BP
GO:0003700 DNA-binding transcription factor activity MF
GO:0046983 protein dimerization activity MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values