Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Protein max.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g8669 g8669.t22 TTS g8669.t22 32168821 32168821
chr_2 g8669 g8669.t22 isoform g8669.t22 32168843 32170065
chr_2 g8669 g8669.t22 exon g8669.t22.exon1 32168843 32169512
chr_2 g8669 g8669.t22 cds g8669.t22.CDS1 32169222 32169512
chr_2 g8669 g8669.t22 exon g8669.t22.exon2 32169591 32169650
chr_2 g8669 g8669.t22 cds g8669.t22.CDS2 32169591 32169650
chr_2 g8669 g8669.t22 exon g8669.t22.exon3 32169716 32169763
chr_2 g8669 g8669.t22 cds g8669.t22.CDS3 32169716 32169763
chr_2 g8669 g8669.t22 exon g8669.t22.exon4 32169843 32169899
chr_2 g8669 g8669.t22 cds g8669.t22.CDS4 32169843 32169899
chr_2 g8669 g8669.t22 exon g8669.t22.exon5 32170005 32170065
chr_2 g8669 g8669.t22 cds g8669.t22.CDS5 32170005 32170025
chr_2 g8669 g8669.t22 TSS g8669.t22 32170144 32170144

Sequences

>g8669.t22 Gene=g8669 Length=896
ATGAAATATTACGAAGAAAACAGTGCTGCGATGAGTGAAGATGAGAATCTTGATGTCGAA
AGAAGAAGAATCAAGCGATAATAAATCCCGAAATGCAAACAATCAATATTTCTCGCAAGC
TGAAAAGCGTGCACATCACAATGCTCTGGAGAGAAAAAGAAGAGATCACATAAAAGATAG
TTTCACATCTTTACGTGATTCTGTTCCTTCACTTCAAGGCGAGAAGGCAAGTCGTGCACA
GATACTAAAGAAAGCGGCCGAATATATACAATTTATGCGACGCAAAAACAATTCACATCA
ACAGGACATTGATGATTTAAAACGTCAAAATTCAATGCTTGAAGCGCAAATTCGATCACT
TGAGCGAGCAAGACAAACTGGAAATTTTGGTGGTGGTGAGAGTGGAAACGAAGTTGCAAT
GGAAAGTGTTAAATCAGACGTAAGCTCGCATGAGAGTTCAGATGAAAATGACGAAAATGA
ACGCAGAAATAAGCGTTTTAAGACAACTACTTATTAAATGTGATTTTCTTATAACTCTCT
CATCCTCCTCCGAAATGATGCAGTTCAATTGCTTTTTATATATGATGATAACGACAAATG
GCAAAGAGAAATATTGGAGACTCACATGCTACTTTATTATTAAGAGTAGTCAATGAGCCG
TATGAAAATATTATTTTAAGACATTAATGCTTGATAAAAAAAATGTTTTATTTTAGTTGC
TATTCTCATTATTTTGAGTTAAAATCCCAAAAAATATTAGTTTCTTTCCTCAATCATGCT
TTTTTTTATTGTAATTAAAAATCAAAAAGTTTTGCAAATGTAAAAAGTTTCATGAAAGTG
GTATGTTGCGAAACTACAATGTTTGAAGAAAAGTTTTTTTTTAGAAGATTAAGACA

>g8669.t22 Gene=g8669 Length=158
MRILMSKEEESSDNKSRNANNQYFSQAEKRAHHNALERKRRDHIKDSFTSLRDSVPSLQG
EKASRAQILKKAAEYIQFMRRKNNSHQQDIDDLKRQNSMLEAQIRSLERARQTGNFGGGE
SGNEVAMESVKSDVSSHESSDENDENERRNKRFKTTTY

Protein features from InterProScan

Transcript Database ID Name Start End E.value
7 g8669.t22 CDD cd11406 bHLHzip_Max 29 97 1.78554E-41
6 g8669.t22 Coils Coil Coil 76 113 -
5 g8669.t22 Gene3D G3DSA:4.10.280.10 HLH 29 107 3.4E-30
11 g8669.t22 MobiDBLite mobidb-lite consensus disorder prediction 1 64 -
12 g8669.t22 MobiDBLite mobidb-lite consensus disorder prediction 1 15 -
10 g8669.t22 MobiDBLite mobidb-lite consensus disorder prediction 30 49 -
13 g8669.t22 MobiDBLite mobidb-lite consensus disorder prediction 109 158 -
9 g8669.t22 MobiDBLite mobidb-lite consensus disorder prediction 134 158 -
2 g8669.t22 PANTHER PTHR10328 PROTEIN MAX MYC-ASSOCIATED FACTOR X 7 152 3.3E-45
3 g8669.t22 PANTHER PTHR10328:SF3 PROTEIN MAX 7 152 3.3E-45
1 g8669.t22 Pfam PF00010 Helix-loop-helix DNA-binding domain 29 79 2.1E-16
14 g8669.t22 ProSiteProfiles PS50888 Myc-type, basic helix-loop-helix (bHLH) domain profile. 28 79 16.044
8 g8669.t22 SMART SM00353 finulus 34 85 1.5E-15
4 g8669.t22 SUPERFAMILY SSF47459 HLH, helix-loop-helix DNA-binding domain 27 107 3.63E-20

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0090575 RNA polymerase II transcription regulator complex CC
GO:0071339 MLL1 complex CC
GO:0046983 protein dimerization activity MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values