Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Protein max.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g8669 g8669.t23 TTS g8669.t23 32168821 32168821
chr_2 g8669 g8669.t23 isoform g8669.t23 32168843 32170065
chr_2 g8669 g8669.t23 exon g8669.t23.exon1 32168843 32169022
chr_2 g8669 g8669.t23 exon g8669.t23.exon2 32169080 32169512
chr_2 g8669 g8669.t23 cds g8669.t23.CDS1 32169222 32169512
chr_2 g8669 g8669.t23 exon g8669.t23.exon3 32169591 32169650
chr_2 g8669 g8669.t23 cds g8669.t23.CDS2 32169591 32169650
chr_2 g8669 g8669.t23 exon g8669.t23.exon4 32169716 32169763
chr_2 g8669 g8669.t23 cds g8669.t23.CDS3 32169716 32169763
chr_2 g8669 g8669.t23 exon g8669.t23.exon5 32169843 32169899
chr_2 g8669 g8669.t23 cds g8669.t23.CDS4 32169843 32169899
chr_2 g8669 g8669.t23 exon g8669.t23.exon6 32170000 32170065
chr_2 g8669 g8669.t23 cds g8669.t23.CDS5 32170000 32170065
chr_2 g8669 g8669.t23 TSS g8669.t23 32170144 32170144

Sequences

>g8669.t23 Gene=g8669 Length=844
ATGAAATATTACGAAGAAAACAGTGCTGCGATGAGTGAAGATGAGAATCTTGATGTCGAA
AGTGACGAAGAAGAATCAAGCGATAATAAATCCCGAAATGCAAACAATCAATATTTCTCG
CAAGCTGAAAAGCGTGCACATCACAATGCTCTGGAGAGAAAAAGAAGAGATCACATAAAA
GATAGTTTCACATCTTTACGTGATTCTGTTCCTTCACTTCAAGGCGAGAAGGCAAGTCGT
GCACAGATACTAAAGAAAGCGGCCGAATATATACAATTTATGCGACGCAAAAACAATTCA
CATCAACAGGACATTGATGATTTAAAACGTCAAAATTCAATGCTTGAAGCGCAAATTCGA
TCACTTGAGCGAGCAAGACAAACTGGAAATTTTGGTGGTGGTGAGAGTGGAAACGAAGTT
GCAATGGAAAGTGTTAAATCAGACGTAAGCTCGCATGAGAGTTCAGATGAAAATGACGAA
AATGAACGCAGAAATAAGCGTTTTAAGACAACTACTTATTAAATGTGATTTTCTTATAAC
TCTCTCATCCTCCTCCGAAATGATGCAGTTCAATTGCTTTTTATATATGATGATAACGAC
AAATGGCAAAGAGAAATATTGGAGACTCACATGCTACTTTATTATTAAGAGTAGTCAATG
AGCCTTGCTATTCTCATTATTTTGAGTTAAAATCCCAAAAAATATTAGTTTCTTTCCTCA
ATCATGCTTTTTTTTATTGTAATTAAAAATCAAAAAGTTTTGCAAATGTAAAAAGTTTCA
TGAAAGTGGTATGTTGCGAAACTACAATGTTTGAAGAAAAGTTTTTTTTTAGAAGATTAA
GACA

>g8669.t23 Gene=g8669 Length=173
MKYYEENSAAMSEDENLDVESDEEESSDNKSRNANNQYFSQAEKRAHHNALERKRRDHIK
DSFTSLRDSVPSLQGEKASRAQILKKAAEYIQFMRRKNNSHQQDIDDLKRQNSMLEAQIR
SLERARQTGNFGGGESGNEVAMESVKSDVSSHESSDENDENERRNKRFKTTTY

Protein features from InterProScan

Transcript Database ID Name Start End E.value
6 g8669.t23 CDD cd11406 bHLHzip_Max 44 112 2.22524E-42
5 g8669.t23 Coils Coil Coil 91 128 -
4 g8669.t23 Gene3D G3DSA:4.10.280.10 HLH 44 122 4.3E-30
10 g8669.t23 MobiDBLite mobidb-lite consensus disorder prediction 1 79 -
8 g8669.t23 MobiDBLite mobidb-lite consensus disorder prediction 45 64 -
9 g8669.t23 MobiDBLite mobidb-lite consensus disorder prediction 125 173 -
11 g8669.t23 MobiDBLite mobidb-lite consensus disorder prediction 149 173 -
2 g8669.t23 PANTHER PTHR10328 PROTEIN MAX MYC-ASSOCIATED FACTOR X 13 164 9.9E-46
1 g8669.t23 Pfam PF00010 Helix-loop-helix DNA-binding domain 44 94 2.5E-16
12 g8669.t23 ProSiteProfiles PS50888 Myc-type, basic helix-loop-helix (bHLH) domain profile. 43 94 16.044
7 g8669.t23 SMART SM00353 finulus 49 100 1.5E-15
3 g8669.t23 SUPERFAMILY SSF47459 HLH, helix-loop-helix DNA-binding domain 42 122 4.51E-20

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0090575 RNA polymerase II transcription regulator complex CC
GO:0071339 MLL1 complex CC
GO:0046983 protein dimerization activity MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values