Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Protein max.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g8669 g8669.t6 isoform g8669.t6 32168809 32170065
chr_2 g8669 g8669.t6 exon g8669.t6.exon1 32168809 32169512
chr_2 g8669 g8669.t6 TTS g8669.t6 32168821 32168821
chr_2 g8669 g8669.t6 cds g8669.t6.CDS1 32169222 32169512
chr_2 g8669 g8669.t6 exon g8669.t6.exon2 32169585 32169650
chr_2 g8669 g8669.t6 cds g8669.t6.CDS2 32169585 32169650
chr_2 g8669 g8669.t6 exon g8669.t6.exon3 32169843 32169899
chr_2 g8669 g8669.t6 cds g8669.t6.CDS3 32169843 32169899
chr_2 g8669 g8669.t6 exon g8669.t6.exon4 32169994 32170065
chr_2 g8669 g8669.t6 cds g8669.t6.CDS4 32169994 32170065
chr_2 g8669 g8669.t6 TSS g8669.t6 32170144 32170144

Sequences

>g8669.t6 Gene=g8669 Length=899
ATGAAATATTACGAAGAAAACAGTGCTGCGATGAGTGAAGATGAGAATCTTGATGTCGAA
AGTGACGTGAGTGAAGAAGAATCAAGCGATAATAAATCCCGAAATGCAAACAATCAATAT
TTCTCGCAACACATAAAAGATAGTTTCACATCTTTACGTGATTCTGTTCCTTCACTTCAA
GGCGAGAAGGTACATGCAAGTCGTGCACAGATACTAAAGAAAGCGGCCGAATATATACAA
TTTATGCGACGCAAAAACAATTCACATCAACAGGACATTGATGATTTAAAACGTCAAAAT
TCAATGCTTGAAGCGCAAATTCGATCACTTGAGCGAGCAAGACAAACTGGAAATTTTGGT
GGTGGTGAGAGTGGAAACGAAGTTGCAATGGAAAGTGTTAAATCAGACGTAAGCTCGCAT
GAGAGTTCAGATGAAAATGACGAAAATGAACGCAGAAATAAGCGTTTTAAGACAACTACT
TATTAAATGTGATTTTCTTATAACTCTCTCATCCTCCTCCGAAATGATGCAGTTCAATTG
CTTTTTATATATGATGATAACGACAAATGGCAAAGAGAAATATTGGAGACTCACATGCTA
CTTTATTATTAAGAGTAGTCAATGAGCCGTATGAAAATATTATTTTAAGACATTAATGCT
TGATAAAAAAAATGTTTTATTTTAGTTGCTATTCTCATTATTTTGAGTTAAAATCCCAAA
AAATATTAGTTTCTTTCCTCAATCATGCTTTTTTTTATTGTAATTAAAAATCAAAAAGTT
TTGCAAATGTAAAAAGTTTCATGAAAGTGGTATGTTGCGAAACTACAATGTTTGAAGAAA
AGTTTTTTTTTAGAAGATTAAGACAAATAAAGATTTAAATTGTAATCAAAATATTAACA

>g8669.t6 Gene=g8669 Length=161
MKYYEENSAAMSEDENLDVESDVSEEESSDNKSRNANNQYFSQHIKDSFTSLRDSVPSLQ
GEKVHASRAQILKKAAEYIQFMRRKNNSHQQDIDDLKRQNSMLEAQIRSLERARQTGNFG
GGESGNEVAMESVKSDVSSHESSDENDENERRNKRFKTTTY

Protein features from InterProScan

Transcript Database ID Name Start End E.value
7 g8669.t6 Coils Coil Coil 79 116 -
6 g8669.t6 Gene3D G3DSA:4.10.280.10 HLH 43 114 6.3E-21
12 g8669.t6 MobiDBLite mobidb-lite consensus disorder prediction 1 40 -
9 g8669.t6 MobiDBLite mobidb-lite consensus disorder prediction 11 25 -
11 g8669.t6 MobiDBLite mobidb-lite consensus disorder prediction 112 161 -
10 g8669.t6 MobiDBLite mobidb-lite consensus disorder prediction 137 161 -
2 g8669.t6 PANTHER PTHR10328 PROTEIN MAX MYC-ASSOCIATED FACTOR X 42 155 1.7E-28
3 g8669.t6 PANTHER PTHR10328:SF3 PROTEIN MAX 42 155 1.7E-28
1 g8669.t6 Pfam PF00010 Helix-loop-helix DNA-binding domain 43 82 4.5E-7
13 g8669.t6 ProSiteProfiles PS50888 Myc-type, basic helix-loop-helix (bHLH) domain profile. 29 82 9.623
8 g8669.t6 SMART SM00353 finulus 35 88 2.4E-4
5 g8669.t6 SUPERFAMILY SSF47459 HLH, helix-loop-helix DNA-binding domain 35 99 1.87E-9
4 g8669.t6 SUPERFAMILY SSF57959 Leucine zipper domain 79 109 6.75E-12

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0090575 RNA polymerase II transcription regulator complex CC
GO:0071339 MLL1 complex CC
GO:0046983 protein dimerization activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values