General information for g867.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as ABC transporter G family member 23.
Parent gene
- The parent gene g867 is located on chr_3: 6578100..6592641 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g867 | g867.t1 | isoform | g867.t1 | 6578100 | 6592641 |
| chr_3 | g867 | g867.t1 | exon | g867.t1.exon1 | 6578100 | 6578378 |
| chr_3 | g867 | g867.t1 | cds | g867.t1.CDS1 | 6578100 | 6578378 |
| chr_3 | g867 | g867.t1 | exon | g867.t1.exon2 | 6590413 | 6590578 |
| chr_3 | g867 | g867.t1 | cds | g867.t1.CDS2 | 6590413 | 6590578 |
| chr_3 | g867 | g867.t1 | exon | g867.t1.exon3 | 6590629 | 6590991 |
| chr_3 | g867 | g867.t1 | cds | g867.t1.CDS3 | 6590629 | 6590991 |
| chr_3 | g867 | g867.t1 | exon | g867.t1.exon4 | 6591103 | 6591636 |
| chr_3 | g867 | g867.t1 | cds | g867.t1.CDS4 | 6591103 | 6591636 |
| chr_3 | g867 | g867.t1 | exon | g867.t1.exon5 | 6591698 | 6592477 |
| chr_3 | g867 | g867.t1 | cds | g867.t1.CDS5 | 6591698 | 6592477 |
| chr_3 | g867 | g867.t1 | exon | g867.t1.exon6 | 6592541 | 6592641 |
| chr_3 | g867 | g867.t1 | cds | g867.t1.CDS6 | 6592541 | 6592641 |
| chr_3 | g867 | g867.t1 | TSS | g867.t1 | NA | NA |
| chr_3 | g867 | g867.t1 | TTS | g867.t1 | NA | NA |
Sequences
>g867.t1 Gene=g867 Length=2223
ATGAAAACTAATTCTATTCAAGTTGAAAAAGTTTTCAAAGCATTTGAAAAGAATAAAAAT
GTTTTGAATGGAATAAATTTGACAACTAAAACTGGAGGAATTTATGCATTAATTGGATCA
TCAGGATGTGGCAAAACAACACTTTTAAATTGCATAATGAGGATGTACAAAGTTGATAGT
GGAATAATTAAAATGTTTGATCAAAAAATTGAGTTGAAAAAAACTTCTGAACTTTTAAAT
TTTATAGGTTTTATACCCCAAGAAATTTCACTTGTTCCTCAACTAACAATTAAAGAAACT
TTTGAATATTTTGCAAATTTGCATTCGATGAATCAAAAGAAATTTAATATGCGAATTTTG
ATGATTTCAGACTTGTTAGAACTACCAGCATTGAATGAATTTATTGGTAATTTATCAGGT
GGTCAACAAAGACGAATTTCACTTGCAGTTTCATTCATTCATGATCCAAAAGTGCTTATT
TTGGATGAACCGACTGTTGGACTTGACTTTGAACTTCGTAACAAAATTTGGAATTTTTTC
TACAAACAAACAAGTAAAAATGGTCTTTCAGTTTTAATCACGACTCATTGCATGAATGAA
GTTGCAAAATCTCATCGTTGTGGTTTCATGATGAATGGAAAAATAATTATTGAAGATAAG
CCATCATTGATTAAAGAAAAATTGAATGTTGAAACTTTTGACGATGCCTTTTATCAACTT
TATTTGAAAGTAAATCAATTTAAAGTTAAAAGAAATTCTGTAATCGATTTGAAATTCAAA
AGTAAAAACGATACAATTGACAGAAATCTGTTTAAAATAAGATTAAGTGTAATTAAAGGT
TTACTTGTCAAAGACTTTCATCGCTTAAAAAGATCTTATATCGAGGCTATATTGCTATTT
TTGACAACTTTTTCATGGGCTTTTTTGTTTTCAATAACTTTTGGTCATTATCCTAATGAT
TTGAAAATTGGAGTTCTTAATTATGAAGCTTATAACTGTGAAAACTACTCTATAGTACAA
GATGGTAGAAATATGAAATTATCTTGCGAATATTTTGATCAAATTCATGGAGTTGAGAAA
AATTTTTACAATTCTCAAAGGGATGCGATTCAAGATTTAAAGAATAGAAAAATAATTTCT
CTAATTACAGTTAATGAAAATTTTTCAAATTCATTAATAACAAAATCTCAAGAAATTCAT
GATCTTGAAATTTTTCTTGATTATTCTGATTATTATTTTGCAATTTACATGAAATATAAA
ATTTGTGACACTTTCCGAGATTTTCTTCATTATCAATCCAAAAAATTTCGTATAAGAAGG
TTTTATTTAAATATTTATAATATTGAATATCTTTACATGCAATCAACATCAATTTTTAAA
TTTATTAAATCTGTTGCAACAAGTGACATCATATTGTTGTCTTCAATAGCAATGATATCC
TCATCAGTTATTGCAATTATACAAAGTCGTGTTGATGGTATTTGGAATCGAAGTTTATTA
AATGGAGTTCAAACATCAGAAATTATAATAGCATACTTAATTCAATATTCTTGTTATGCT
ATAATCACATCAATTGAGTTAATTTTGTCTTTAAAATTTATTTTCCAAATTGAAATCATT
GGAAATGTTTGGCTTGCCTTTACTTTAATTTTTATTAATGCTATGAATGTATTTTTGTTT
GGATTTAATGTGTCAATAATTTCTAAAGATGTCACAATTGCTGGTTATACGGGAATTGGA
TTGTTAGTAATTTTGAATTCTTTGTCAGGCATAATTTGGCCAATTCAAGGAATTTCTAAA
TGGATTCAACCACTTCAATACTTTTTTCCTATCTCTTTAACTTGCACTGCTCTTCATGGA
ATTGTATTTAAAGGTTATGAAATTTTGCAAAAAAATGTTCTTGAAGCATTTGTAGTTATA
ATTAGTAATAATATTTTATTAATCTTCAGTTCAATTTTCAATTTTTTCTTTCAAAAAATT
CCAAATCAAGTAAAAATGAATCGAAGTCAAAGCAAATCTTCCAAGAATCGTCAACGATCA
AGATCAAAATCAACTCGTCGCAATCAATCGAAAAAGTCAGAGAAAAAATCAAAATCAACT
TCACGAAATATTCAAGTAATGGACAATGGTGACACACTTTGCCTTTGTATTCCAAGTTCT
GCTATATATTTTCAAAATCTTGGTAAAAATGCAAGAATGATTGAGAAAACATCCAATGCA
TGA
>g867.t1 Gene=g867 Length=740
MKTNSIQVEKVFKAFEKNKNVLNGINLTTKTGGIYALIGSSGCGKTTLLNCIMRMYKVDS
GIIKMFDQKIELKKTSELLNFIGFIPQEISLVPQLTIKETFEYFANLHSMNQKKFNMRIL
MISDLLELPALNEFIGNLSGGQQRRISLAVSFIHDPKVLILDEPTVGLDFELRNKIWNFF
YKQTSKNGLSVLITTHCMNEVAKSHRCGFMMNGKIIIEDKPSLIKEKLNVETFDDAFYQL
YLKVNQFKVKRNSVIDLKFKSKNDTIDRNLFKIRLSVIKGLLVKDFHRLKRSYIEAILLF
LTTFSWAFLFSITFGHYPNDLKIGVLNYEAYNCENYSIVQDGRNMKLSCEYFDQIHGVEK
NFYNSQRDAIQDLKNRKIISLITVNENFSNSLITKSQEIHDLEIFLDYSDYYFAIYMKYK
ICDTFRDFLHYQSKKFRIRRFYLNIYNIEYLYMQSTSIFKFIKSVATSDIILLSSIAMIS
SSVIAIIQSRVDGIWNRSLLNGVQTSEIIIAYLIQYSCYAIITSIELILSLKFIFQIEII
GNVWLAFTLIFINAMNVFLFGFNVSIISKDVTIAGYTGIGLLVILNSLSGIIWPIQGISK
WIQPLQYFFPISLTCTALHGIVFKGYEILQKNVLEAFVVIISNNILLIFSSIFNFFFQKI
PNQVKMNRSQSKSSKNRQRSRSKSTRRNQSKKSEKKSKSTSRNIQVMDNGDTLCLCIPSS
AIYFQNLGKNARMIEKTSNA
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 24 | g867.t1 | CDD | cd03230 | ABC_DR_subfamily_A | 6 | 215 | 3.57223E-46 |
| 8 | g867.t1 | Gene3D | G3DSA:3.40.50.300 | - | 1 | 245 | 1.8E-55 |
| 34 | g867.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 667 | 702 | - |
| 35 | g867.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 672 | 693 | - |
| 4 | g867.t1 | PANTHER | PTHR43038 | ATP-BINDING CASSETTE, SUB-FAMILY H, MEMBER 1 | 5 | 243 | 1.1E-108 |
| 6 | g867.t1 | PANTHER | PTHR43038:SF2 | RH61964P | 5 | 243 | 1.1E-108 |
| 3 | g867.t1 | PANTHER | PTHR43038 | ATP-BINDING CASSETTE, SUB-FAMILY H, MEMBER 1 | 249 | 649 | 1.1E-108 |
| 5 | g867.t1 | PANTHER | PTHR43038:SF2 | RH61964P | 249 | 649 | 1.1E-108 |
| 2 | g867.t1 | Pfam | PF00005 | ABC transporter | 22 | 165 | 7.1E-29 |
| 1 | g867.t1 | Pfam | PF12698 | ABC-2 family transporter protein | 297 | 648 | 1.5E-12 |
| 16 | g867.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 292 | - |
| 20 | g867.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 293 | 314 | - |
| 12 | g867.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 315 | 469 | - |
| 19 | g867.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 470 | 489 | - |
| 14 | g867.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 490 | 508 | - |
| 18 | g867.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 509 | 531 | - |
| 10 | g867.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 532 | 542 | - |
| 23 | g867.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 543 | 567 | - |
| 13 | g867.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 568 | 572 | - |
| 22 | g867.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 573 | 595 | - |
| 9 | g867.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 596 | 606 | - |
| 17 | g867.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 607 | 624 | - |
| 15 | g867.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 625 | 635 | - |
| 21 | g867.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 636 | 657 | - |
| 11 | g867.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 658 | 740 | - |
| 33 | g867.t1 | ProSitePatterns | PS00211 | ABC transporters family signature. | 138 | 152 | - |
| 36 | g867.t1 | ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 6 | 237 | 20.268 |
| 32 | g867.t1 | SMART | SM00382 | AAA_5 | 31 | 222 | 1.0E-10 |
| 7 | g867.t1 | SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 6 | 227 | 2.11E-52 |
| 27 | g867.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 296 | 318 | - |
| 26 | g867.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 465 | 487 | - |
| 30 | g867.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 508 | 530 | - |
| 29 | g867.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 545 | 567 | - |
| 31 | g867.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 574 | 596 | - |
| 28 | g867.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 601 | 623 | - |
| 25 | g867.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 636 | 658 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005524 | ATP binding | MF |
| GO:0016887 | ATP hydrolysis activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed